WormBase Tree Display for Sequence: F54D8
expand all nodes | collapse all nodes | view schema
| F54D8 | DNA | F54D8 | 37019 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00018802 | 27256 | 31291 | |
| WBGene00001076 | 31601 | 32763 | ||||
| WBGene00023292 | 22488 | 22971 | ||||
| WBGene00284847 | 19077 | 19280 | ||||
| WBGene00000279 | 9900 | 7477 | ||||
| WBGene00000107 | 2035 | 4932 | ||||
| WBGene00018801 | 15875 | 15321 | ||||
| WBGene00195000 | 5169 | 5069 | ||||
| WBGene00199278 | 10748 | 10829 | ||||
| WBGene00006519 | 5995 | 7266 | ||||
| CDS_child (166) | ||||||
| Transcript (14) | ||||||
| Pseudogene | F54D8.p1:wp228 | 22731 | 22772 | |||
| Transposon | WBTransposon00000123 | 22443 | 23038 | |||
| WBTransposon00000680 | 15875 | 15321 | ||||
| PCR_product (35) | ||||||
| Allele (446) | ||||||
| Oligo_set | Aff_F54D8.1 | 32113 | 32712 | |||
| Aff_F54D8.2 | 6006 | 7128 | ||||
| Aff_F54D8.3 | 4116 | 4776 | ||||
| Aff_F54D8.4 | 8527 | 7477 | ||||
| Aff_F54D8.5 | 15875 | 15321 | ||||
| Aff_F54D8.6 | 30062 | 31089 | ||||
| Feature_object (478) | ||||||
| Feature_data | F54D8:Polysome | 1 | 37019 | |||
| F54D8:TranscriptionallyActiveRegion | 1 | 37019 | ||||
| F54D8:ChIPSeqTF | 1 | 37019 | ||||
| F54D8:TRF | 1 | 37019 | ||||
| F54D8:Dust | 1 | 37019 | ||||
| F54D8:inverted | 1 | 37019 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | F21H11 | 33520 | ||||
| Overlap_left | C45G9 | |||||
| Clone_left_end | F21H11 | 25833 | ||||
| F54D8 | 1 | |||||
| Clone_right_end | C45G9 | 2739 | ||||
| F54D8 | 37019 | |||||
| DB_info | Database | EMBL | NDB_AC | FO080874 | ||
| NDB_ID | _U12966 | |||||
| NDB_SV | FO080874.2 | |||||
| Secondary_accession | U12966 | |||||
| DB_remark | The 5' clone is C45G9, 300 bp overlap; the 3' clone is F21H11, 3500 bp overlap. Actual start of this clone is at base position 1 of F54D8; actual end is at 37017 of F54D8. | |||||
| [121025] Sequence correction WBsf268658 : Insertion G1 bases from @ 30250 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Bentley D | ||||
| From_laboratory | RW | |||||
| Date | 24 May 1994 00:00:00 | |||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | F54D8 | ||||
| Reference | WBPaper00015337 | |||||
| WBPaper00021827 | ||||||
| Remark | [20100424 wnash] added 1 bp (c) at position 29736 (between gtcgatagac and acctggtggt) | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | adbce3a0806142ecc31aa27cd7de7eb7 | ||||
| Status | Finished | |||||
| Submitted | 24 May 1994 00:00:00 | |||||
| Map | Sequence-III | |||||
| Interpolated_map_position | III | -2.15044 | ||||
| Method | Genomic_canonical |
