WormBase Tree Display for CDS: F55D12.4a
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F55D12.4a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F55D12 | |||
Structure | Source_exons | 1 | 140 | |||
1418 | 1545 | |||||
2297 | 2470 | |||||
2514 | 2821 | |||||
2962 | 3043 | |||||
3631 | 3728 | |||||
4110 | 4292 | |||||
DB_info | Database | SwissProt | UniProtAcc | G5ECR9 | ||
UniProtIsoformAcc | G5ECR9-1 | |||||
UniProt | UniProtAcc | G5ECR9 | ||||
UniProt_GCRP | UniProtAcc | G5ECR9 | ||||
AlphaFold | entry | G5ECR9 | ||||
NCBI_protein | GI_number | GI:222350618 | ||||
TREEFAM | TREEFAM_ID | TF315716 | ||||
Protein_id | CHROMOSOME_I | CAP16277 | 2 | |||
DB_remark | UNC-55 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | EF601082 | |||
Visible | Gene | WBGene00006790 | ||||
Corresponding_transcript | F55D12.4a.1 | |||||
Corresponding_protein | CE43454 | |||||
Corresponding_PCR_product | cenix:31-e10 | |||||
mv_F55D12.4 | ||||||
sjj_F55D12.4 | ||||||
sjj_F55D12.6 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA | male_Nanopore_Roach_144782 | Inferred_automatically | transcript_builder.pl | |||
L2_Nanopore_Roach_19296 | Inferred_automatically | transcript_builder.pl | ||||
EF601082 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result (16) | ||||||
Microarray_results (20) | ||||||
Brief_identification | Nuclear hormone receptor unc-55 | Accession_evidence | UniProt | SP:G5ECR9 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 21 Jan 2009 00:00:00 | WBPerson1983 | ||||
Remark | Annotated using Pfam | |||||
[090121 pad] Removed the 1st exon based on mRNA data and published figures. | Paper_evidence | WBPaper00032054 | ||||
Accession_evidence | NDB | EF601082 | ||||
Curator_confirmed | WBPerson1983 | |||||
Method | curated |