WormBase Tree Display for CDS: F59E12.12
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| F59E12.12 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F59E12 | |||
| Structure | Source_exons | 1 | 71 | |||
| 119 | 983 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O01904 | ||
| UniProt | UniProtAcc | O01904 | ||||
| UniProt_GCRP | UniProtAcc | O01904 | ||||
| AlphaFold | entry | O01904 | ||||
| NCBI_protein | GI_number | GI:351050435 | ||||
| Protein_id | CHROMOSOME_II | CCD64978 | 1 | |||
| DB_remark | BLI-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000252 | ||||
| Corresponding_transcript | F59E12.12.1 | |||||
| Corresponding_protein | CE11540 | |||||
| Corresponding_PCR_product | cenix:244-c8 | |||||
| mv_F59E12.12 | ||||||
| mv_F59E12.n | ||||||
| sjj2_F59E12.12 | ||||||
| sjj_F59E12.12 | ||||||
| Corresponding_oligo_set | 188391_at | |||||
| A_12_P101315 | ||||||
| Aff_F59E12.12 | ||||||
| GPL13394_WBGene00000252 | ||||||
| GPL13914_F59E12.12 | ||||||
| GPL14144_F59E12.12_399-458_0.930_2_B | ||||||
| GPL14144_F59E12.12_510-569_0.926_5_C | ||||||
| GPL14144_F59E12.12_665-724_0.942_1_A | ||||||
| GPL19516_CGZ0025623 | ||||||
| GPL21109_F59E12.12 | ||||||
| GPL3518_CE11540 | ||||||
| GPL8304_CE_WBGene00000252_A | ||||||
| GPL8673_F59E12_12P00029 | ||||||
| GPL8673_F59E12_12P00055 | ||||||
| GPL8673_F59E12_12P00457 | ||||||
| GPL9450_F59E12.12 | ||||||
| cea2.i.13448 | ||||||
| Matching_cDNA (65) | ||||||
| RNAi_result | WBRNAi00067756 | |||||
| WBRNAi00008908 | ||||||
| WBRNAi00033210 | ||||||
| WBRNAi00066973 | ||||||
| WBRNAi00075956 | ||||||
| WBRNAi00025777 | ||||||
| WBRNAi00049204 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O01904 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
