WormBase Tree Display for Sequence: H39E23

H39E23 DNA: H39E23 21814
  SMap: S_child: Gene_child: WBGene00044201 3185 5425
        WBGene00010432 5716 7420
        WBGene00200638 21630 21763
      CDS_child: H39E23.1g 21580 8176
        H39E23.1h 16886 8176
        H39E23.1i 9866 8176
        H39E23.1k 16203 8176
        H39E23.2 5735 7401
        H39E23.2:wp206 5735 7401
        H39E23.3 3185 5425
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g40_x29_V_m 9481 9429
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30n11_x29_V_m 13137 8179
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30n11e3k406_x29_V_m 10956 10813
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g25n11_x29_V_m 13144 9605
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g25n11e10k150_x29_V_m 9918 9783
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g31e6k60_x29_V_m 16886 16683
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g68_x29_V_p 6175 7395
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g111n11_x29_V_m 21580 12977
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g28n11_x29_V_m 16886 16743
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g67e2k52_x29_V_p 6175 6282
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g20n11_x29_V_m 9169 8943
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g25n11_x29_V_m 11904 11821
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g16n11_x29_V_m 13144 8179
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g16n11e9k266_x29_V_m 10956 10813
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g16n11e10k126_x29_V_m 9918 9783
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g23n11_x29_V_m 16886 16743
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g70_x29_V_p 5735 7386
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_gH39E23.3 3185 5422
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g26_x29_V_m 9481 9429
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g14n11_x29_V_m 21580 12977
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g37_x29_V_m 9169 8943
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g52_x29_V_m 18475 14360
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g35_x29_V_m 10956 9858
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g44_x29_V_m 21580 21485
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g53_x29_V_m 16886 16743
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g36_x29_V_m 9188 8179
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g131_x29_V_m 16203 10834
        RNASEQ_embryo_him-8_20dC_post-L1_g25_x29_V_m 16886 16743
        RNASEQ_embryo_him-8_20dC_post-L1_g20_x29_V_m 13144 8179
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g28n11e9k423_x29_V_m 10956 10813
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g23n11_x29_V_m 21580 12977
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g20_x29_V_m 9169 8179
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g28n11_x29_V_m 13144 9551
        RNASEQ_L4_soma_JK1107_no_DNaseI_g228_x29_V_m 13137 10834
        RNASEQ_L4_soma_JK1107_no_DNaseI_g35e5k73_x29_V_m 9918 9783
        RNASEQ_L4_soma_JK1107_no_DNaseI_g35_x29_V_m 10956 9852
        RNASEQ_L4_soma_JK1107_no_DNaseI_g228e4k165_x29_V_m 10956 10813
        RNASEQ_L4_soma_JK1107_no_DNaseI_g37n11_x29_V_m 16203 9623
        RNASEQ_L4_soma_JK1107_no_DNaseI_g46n11_x29_V_m 9866 8179
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g25n11e6k57_x29_V_m 9918 9792
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g24_x29_V_m 9481 8179
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g25n11_x29_V_m 16203 9599
        RNASEQ_early_embryo_g10s11k125_x29_V_m 9169 8179
        RNASEQ_early_embryo_g9e12k102_x29_V_m 9623 9374
        RNASEQ_early_embryo_g14_x29_V_m 16886 16743
        RNASEQ_early_embryo_g9_x29_V_m 13144 8943
        RNASEQ_early_embryo_g9m11_x29_V_m 9918 9783
        RNASEQ_early_embryo_g9m10_x29_V_m 10956 10813
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g10n11s9k74_x29_V_m 9866 8179
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g11n11s7k130_x29_V_m 11904 9850
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g7n11e9k833_x29_V_m 10956 10813
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g12n11_x29_V_m 16886 16743
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g7n11m10_x29_V_m 9918 9783
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g8n11s10k804_x29_V_m 9169 8943
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g7n11m11_x29_V_m 9623 9374
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g10n11_x29_V_m 21580 12977
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g53n11s10k369_x29_V_m 9481 9429
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g7n11_x29_V_m 13144 11821
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g105n11_x29t1_V_m 16203 12977
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g47n11_x29t1_V_m 10956 9429
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g46n11e5k411_x29t1_V_m 13144 10813
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g34n11s6k54_x29t1_V_m 9481 8179
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g38e11k411_x29t1_V_m 21580 16107
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g28n11_x29_V_m 16886 12877
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g13n11s14k84_x29_V_m 9169 8943
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g13n11s13k63_x29_V_m 9866 8179
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g13n11s7k72_x29_V_m 16203 16107
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g27n11_x29_V_m 21580 21485
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g102n11_x29_V_m 13137 9467
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g28n11e10k383_x29_V_m 9918 9783
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g24n11e4k405_x29_V_m 10956 10813
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g17n11_x29_V_m 9918 9850
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g17n11e3k405_x29_V_m 14206 13913
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g19e12k128_x29t1_V_m 9623 9374
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g19e10k723_x29t1_V_m 10956 10813
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g19s8k64_x29t1_V_m 11904 11821
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g16n11e12k151_x29t1_V_m 10956 10813
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g32n11_x29t1_V_m 21580 21485
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g49n11_x29_V_m 13144 11821
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g49n11e9k447_x29_V_m 10956 10813
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g43n11_x29_V_m 21580 16719
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g13n11s10k118_x29_V_m 11904 8179
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g39n11_x29_V_m 21580 21485
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g36n11_x29_V_m 13144 8179
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g36n11e7k272_x29_V_m 10956 10813
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g125n11_x29_V_m 16886 12977
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g45_x29_V_m 9169 8943
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g38n11_x29_V_m 16203 16107
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g13n11s13k91_x29_V_m 9169 8179
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g56n11_x29_V_m 13144 8943
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g56n11e7k397_x29_V_m 10956 10813
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g54n11_x29_V_m 21580 21485
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g73n11_x29_V_m 16203 16107
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g80n11_x29_V_m 9866 9850
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g56n11e8k75_x29_V_m 9918 9783
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_gH39E23.3 3185 5422
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g60_x29_V_m 13144 8179
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g50_x29_V_m 16886 16719
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g122e2k69_x29_V_p 6169 6282
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g60e11k109_x29_V_m 10956 10813
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g60e12k69_x29_V_m 9918 9783
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g122_x29_V_p 5735 6273
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g65_x29_V_m 9481 9429
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g194_x29_V_p 6585 6671
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g28_x29_V_m 21580 14246
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g33_x29_V_m 13144 9620
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g33e8k103_x29_V_m 13144 12850
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g33e10k465_x29_V_m 10956 10813
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g31_x29t1_V_m 9481 8179
        H39E23.gc1 124 1704
        H39E23.gc2 3185 5425
        H39E23.gc3 9169 8176
        H39E23.gc4 13116 9371
        H39E23.gc5 16886 13281
        H39E23.gc6 21774 17493
        ContigV.elegans.jigsaw.3510.mRNA3510 16886 7413
        ContigV.elegans.jigsaw.3508.mRNA3508 2496 5526
        ContigV.elegans.jigsaw.3509.mRNA3509 5621 7430
        AG1201_RIT5M.1917.T1 1153 299
        gH39E23.3.Ts1 3185 5425
        AG1201_H39E23.2.T2 5735 6285
        AG1201_H39E23.2.T3 5735 7401
        AG1201_H39E23.2.T1 6175 7401
        AG1201_H39E23.1.T18 9866 8176
        AG1201_H39E23.1.T15 11904 8176
        AG1201_H39E23.1.T16 11904 8176
        AG1201_H39E23.1.T17 11904 8176
        AG1201_H39E23.1.T20 11904 8176
        AG1201_H39E23.1.T1 16886 12974
        AG1201_H39E23.1.T2 21580 12974
      Transcript: H39E23.4 21630 21763
        H39E23.1g.1 21580 8176
        H39E23.1h.1 16886 8176
        H39E23.1i.1 9866 8176
        H39E23.1k.1 16203 8176
        H39E23.2.1 5716 7420
        H39E23.3.1 3185 5425
      Nongenomic: yk195b9 7481 16386
      PCR_product: cenix:148-f9 18043 19241
        mv_H39E23.1 8179 21773
        mv_ZK105.g_16 19655 19798
        mv_ZK105.g_8 19655 19768
        sjj2_H39E23.2 6206 7382
        sjj_H39E23.1 15400 16403
      Allele (266)
      Oligo_set: Aff_H39E23.1 10953 8176
      Feature_object (158)
      Feature_data: H39E23:Polysome 1 21814
        H39E23:TranscriptionallyActiveRegion 1 21814
        H39E23:ChIPSeqTF 1 21814
        H39E23:TRF 1 21814
        H39E23:Dust 1 21814
        H39E23:inverted 1 21814
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: AH10 21711
    Overlap_left: D1086
    Clone_left_end: AH10 21711
    Clone_right_end: D1086 104
  DB_info: Database: EMBL NDB_AC Z96102
        NDB_SV Z96102.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: McMurray AA
    From_laboratory: HX
    Date_directory: 980529
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: H39E23
  Properties: Genomic_canonical
    Checksum: MD5: ef6dca8f0f8c155778c5f49c6f921fd8
    Status: Finished: 29 May 1998 00:00:00
      Submitted: 06 Jun 1997 00:00:00
      Annotated: 01 Jan 1980 00:00:00
  Map: Sequence-V Ends: Left: 7993
        Right: 8009
  Interpolated_map_position: V 6.14334
  Assembly_tags: Finished Left 1 4 H39E23
    Clone right end 101 104 D1086
    Clone left end 21711 21714 AH10
    Finished Right 21811 21814 H39E23
    annotation 2881 2885 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - region confirmed by restriction digest
  Method: Genomic_canonical