WormBase Tree Display for Sequence: K01A11

K01A11 DNA: K01A11 33651
  SMap: S_child (11)
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: C34C12 33542
    Overlap_left: F59A2
    Clone_left_end: K01A11 1
      C34C12 33542
    Clone_right_end: F59A2 11187
  DB_info: Database: EMBL NDB_AC Z66514
        NDB_SV Z66514.2
    DB_remark: [121025] Sequence correction WBsf267891 : Deletion A-1 bases @ 7441
      [121025] Sequence correction WBsf268590 : Insertion C1 bases from @ 12269
      [121025] Sequence correction WBsf267865 : Insertion G1 bases from @ 18094
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Burton J
    From_laboratory: HX
    Date_directory: 950726
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: K01A11
  Properties: Genomic_canonical
    Checksum: MD5: 139ca80204b0503980729f8128653a94
    Status: Finished: 26 Jul 1995 00:00:00
      Submitted: 26 Oct 1995 00:00:00
      Annotated: 23 Oct 1995 00:00:00
  Map: Sequence-III Ends: Left: 1444
        Right: 1475
  Interpolated_map_position: III -6.95105
  Assembly_tags: annotation 1 4 Beginning of K01A11
      1825 1992 single-stranded with terms to check
      9824 9923 Single-stranded with terms
      10062 10235 Single-stranded with terms
      9924 10061 Single-stranded with terms
      11184 11187 right end of F59A2
      12269 12269 Extra g in this sequence s28d1.s1l
      15033 15037 deleted clone
      15060 15064 unclear part of hairpin inverted repeat, probably 5 g's, matches 5Cs at other end of inverted repeat
      15162 15161 part of inverted repeat probably a C but data is weak.
      15176 15180 unclear region of hairpin inverted repeat, edited to 5 c's pairs with 5gs at other end of hairpin
      24156 24157 pt mutation on single read
      24987 24987 Majority of reads (including terminators) read G single read gives an A here
      26402 26402 marker point 1
      26925 26935 read may be mis-assembled
      26750 26756 false join between 2 contigs containing repetitive sequence Distance between marker point 1 (26400) and marker point 2 (28360) should be 2.2kb according to restriction digest and pcr data. This suggests a gap of about 200bp at this point. before this point we have 2 full copies of a 120bp repeat element, with a third copy beginning This element has some homology to RcA1 The 2nd contig joins in from the beginning of this tag and contains a further 3 copies of the 120bp motif The gap probably holds 2 copies of this element, which would suggest a total of 6 copies There are then 52 copies of an 11bp motif beginning at 27350 Because of the repetitive nature of this region, some of the bases between the 2 marker points may be ambiguous. Where no base can be called, an n has been left No further work is planned on this gap
      28358 28358 marker point 2
      32709 32720 50 base-pair rule used here.
      33542 33546 Begining of overlap with C34C12
  Method: Genomic_canonical