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WormBase Tree Display for CDS: K08E3.4

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Name Class

K08E3.4EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceK08E3
StructureSource_exons1139
189301
619920
9801189
12351833
18812449
DB_infoDatabaseTrEMBLUniProtAccQ9XUT0
UniProtUniProtAccQ9XUT0
UniProt_GCRPUniProtAccQ9XUT0
AlphaFoldentryQ9XUT0
NCBI_proteinGI_numberGI:3878438
TREEFAMTREEFAM_IDTF318935
Protein_idCHROMOSOME_IIICAB045921
DB_remarkDBN-1 protein; contains similarity to Pfam domains PF00241 (Cofilin/tropomyosin-type actin-binding protein), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR002108 (Actin-depolymerising factor homology domain), IPR029006 (ADF-H/Gelsolin-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001452 (SH3 domain)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00010664
Corresponding_transcriptK08E3.4.1
Corresponding_proteinCE18868
Corresponding_PCR_productcenix:140-c5
mv_K08E3.4
sjj_K08E3.4
smd_K08E3.4
smd_K08E3.4_1
Corresponding_oligo_set (13)
Matching_cDNA (81)
RNAi_resultWBRNAi00080543
WBRNAi00117317
WBRNAi00114664
WBRNAi00117316
WBRNAi00050284
WBRNAi00016807
WBRNAi00117315
WBRNAi00077333
WBRNAi00117318
WBRNAi00034133
Microarray_results (14)
RNASeq_FPKM (74)
RemarkAnnotated using Pfam
SL1 trans-spliced, see EST yk132a12.5
Associated_featureWBsf126504
Methodcurated