WormBase Tree Display for CDS: K10G6.1
expand all nodes | collapse all nodes | view schema
| K10G6.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K10G6 | |||
| Structure | Source_exons | 1 | 167 | |||
| 802 | 883 | |||||
| 1220 | 1300 | |||||
| 3431 | 3814 | |||||
| DB_info | Database | SwissProt | UniProtAcc | P34683 | ||
| UniProt | UniProtAcc | P34683 | ||||
| UniProt_GCRP | UniProtAcc | P34683 | ||||
| AlphaFold | entry | P34683 | ||||
| NCBI_protein | GI_number | GI:351064504 | ||||
| Protein_id | CHROMOSOME_II | CCD72892 | 1 | |||
| DB_remark | LIN-31 protein; contains similarity to Pfam domain PF00250 (Forkhead domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR001766 (Fork head domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00003017 | ||||
| Corresponding_transcript | K10G6.1.1 | |||||
| Corresponding_protein | CE12098 | |||||
| Corresponding_PCR_product | cenix:228-d5 | |||||
| mv_K10G6.1 | ||||||
| mv_K10G6.a | ||||||
| sjj_K10G6.1 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_15889 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_13752 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_14433 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_104167 | ||||||
| yk631b5.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_13280 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7339|c4_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_12171 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_10857 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (18) | ||||||
| Microarray_results (14) | ||||||
| Brief_identification | Protein lin-31 | Accession_evidence | UniProt | SP:P34683 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
