WormBase Tree Display for CDS: OVOC13386
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OVOC13386 | SMap | S_parent | Sequence | OVOC_OM3_77 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 135 | |||
499 | 750 | |||||
939 | 1138 | |||||
1341 | 1485 | |||||
1662 | 2168 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF03372 (Endonuclease/Exonuclease/phosphatase family), PF17751 (SKICH domain); contains similarity to Interpro domains IPR000300 (Inositol polyphosphate-related phosphatase), IPR041611 (SKICH domain), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00255386 | ||||
Corresponding_transcript | OVOC13386.1 | |||||
Corresponding_protein | OVP13036 | |||||
Brief_identification | Inositol polyphosphate 5-phosphatase homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 128.741 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 122.175 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
134.519 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
169.534 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 169.168 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
180.137 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140226 es9] OVOC8649 gene model is split using RNA-Seq data and protein evidence to create OVOC8649 and OVOC13386. | Curator_confirmed | WBPerson2062 | |||
Method | curated |