WormBase Tree Display for CDS: OVOC3500
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| OVOC3500 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_199 | |||
| Structure | Source_exons (23) | |||||
| DB_info | DB_remark | OVO-RTEL-1 protein; contains similarity to Pfam domains PF06733 (DEAD_2), PF13307 (Helicase C-terminal domain); contains similarity to Interpro domains IPR010614 (RAD3-like helicase, DEAD), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006554 (Helicase-like, DEXD box c2 type), IPR006555 (ATP-dependent helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR013020 (ATP-dependent helicase Rad3/Chl1-like) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00240309 | ||||
| Corresponding_transcript | OVOC3500.1 | |||||
| Corresponding_protein | OVP14286 | |||||
| Matching_cDNA | ovolvulus_GG570|c169_g1_i10 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Regulator of telomere elongation helicase 1 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 1.35777 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 0.538531 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 1.86077 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 2.12069 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 1.98319 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 6.19988 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140422 es9] Gene model OVOC3500 has been split into this and OVOC13443 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
