WormBase Tree Display for CDS: OVOC3747
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| OVOC3747 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_209 | |||
| Structure | Source_exons (46) | |||||
| DB_info | DB_remark | OVO-UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR005821 (Ion transport domain), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00240556 | ||||
| Corresponding_transcript | OVOC3747.1 | |||||
| Corresponding_protein | OVP14484 | |||||
| Brief_identification | Voltage-dependent L-type calcium channel subunit alpha-1F homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 2.13073 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 0.688589 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 11.0366 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 13.4785 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 2.06399 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 2.44539 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140422 es9] Merged OVOC3746, OVOC3747, OVOC3748 and OVOC3749 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
