WormBase Tree Display for CDS: OVOC4187
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| OVOC4187 | SMap | S_parent | Sequence | OVOC_OM2_13 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF00282 (Pyridoxal-dependent decarboxylase conserved domain); contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00240996 | ||||
| Corresponding_transcript | OVOC4187.1 | |||||
| Corresponding_protein | OVP09179 | |||||
| Matching_cDNA | ovolvulus_GG1367|c110_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Sphingosine-1-phosphate lyase 1 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 13.1279 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 23.6304 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 48.6348 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 53.0425 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 22.2059 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 22.8636 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
