WormBase Tree Display for CDS: OVOC427b
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OVOC427b | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 159 | |||
1133 | 1396 | |||||
1678 | 1761 | |||||
2472 | 2664 | |||||
2899 | 3051 | |||||
3231 | 3308 | |||||
4329 | 4520 | |||||
4806 | 4920 | |||||
6465 | 6477 | |||||
DB_info | DB_remark | OVO-UNC-75 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
Origin | From_laboratory | HX | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Feature_evidence | WBsf925493 | |||||
Visible | Gene | WBGene00237236 | ||||
Corresponding_transcript | OVOC427b.1 | |||||
Corresponding_protein | OVP14732 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 10.6689 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 13.9005 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
14.1657 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
18.1767 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 15.1144 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
38.7699 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [150213 mh6] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson4055 | |||
Feature_evidence | WBsf925493 | |||||
From_analysis | RNASeq | |||||
Method | curated |