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WormBase Tree Display for CDS: OVOC482

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Name Class

OVOC482EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons (16)
DB_infoDB_remarkcontains similarity to Pfam domains PF02383 (SacI homology domain), PF12456 (Inositol phosphatase); contains similarity to Interpro domains IPR002013 (SAC domain), IPR022158 (Inositol phosphatase)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00237291
Corresponding_transcriptOVOC482.1
OVOC482.2
Corresponding_proteinOVP13200
Matching_cDNAovolvulus_GG629|c211_g1_i6Inferred_automaticallytranscript_builder.pl
ovolvulus_GG629|c211_g1_i15Inferred_automaticallytranscript_builder.pl
Brief_identificationPhosphatidylinositide phosphatase SAC2 homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (14)
WBls:00001070.109328From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:00001080.244563From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
0.891502From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
1.13844From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:00006640.784704From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
0.942118From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Remark[140306 es9] Splice sites of OVOC482 gene model corrected using RNA-Seq, protein evidence and SL1 data.Curator_confirmedWBPerson2062
Methodcurated