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WormBase Tree Display for CDS: OVOC4938

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Name Class

OVOC4938SMapS_parentSequenceOVOC_OM2_49
StructureSource_exons (13)
DB_infoDB_remarkOVO-SPL-1 protein; contains similarity to Pfam domain PF00282 (Pyridoxal-dependent decarboxylase conserved domain); contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain)
OriginFrom_laboratoryMGM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00241747
Corresponding_transcriptOVOC4938.1
OVOC4938.2
Corresponding_proteinOVP02714
Matching_cDNAovolvulus_GG1351|c227_g1_i8Inferred_automaticallytranscript_builder.pl
ovolvulus_GG1351|c227_g1_i12Inferred_automaticallytranscript_builder.pl
Brief_identificationSphingosine-1-phosphate lyase homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:00001076.14338From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010811.0939From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
15.7337From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
7.43244From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:00006647.11315From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
7.83017From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Methodcurated