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WormBase Tree Display for CDS: OVOC5507

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Name Class

OVOC5507EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM2_79
StructureSource_exons (21)
DB_infoDB_remarkOVO-UNC-26 protein; contains similarity to Pfam domains PF02383 (SacI homology domain), PF03372 (Endonuclease/Exonuclease/phosphatase family), PF08952 (Domain of unknown function (DUF1866)); contains similarity to Interpro domains IPR002013 (SAC domain), IPR000300 (Inositol polyphosphate-related phosphatase), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015047 (Synaptojanin-1/2, RNA recognition motif), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00242316
Corresponding_transcriptOVOC5507.1
Corresponding_proteinOVP14010
Matching_cDNAAI130354Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:0000104 (15)
WBls:000010710.4296From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010810.8442From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
41.5044From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
44.5311From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066439.563From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
45.0056From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Remark[140509 es9] Splice sites of OVOC5507 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data.Curator_confirmedWBPerson2062
Methodcurated