WormBase Tree Display for CDS: OVOC8110
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OVOC8110 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM3_71 | |||
Structure | Source_exons (8) | |||||
DB_info | DB_remark | OVO-UNC-64 protein; contains similarity to Pfam domains PF00804 (Syntaxin), PF05739 (SNARE domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR006011 (Syntaxin, N-terminal domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00244919 | ||||
Corresponding_transcript | OVOC8110.1 | |||||
Corresponding_protein | OVP14298 | |||||
Matching_cDNA | ovolvulus_GG317|c111_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Syntaxin-1A homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 16.6435 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 15.2144 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
16.8185 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
25.2222 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 10.5633 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
8.3361 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140429 es9] Splice sites of OVOC8110 gene model corrected using RNA-Seq, protein evidence and SL1 data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |