WormBase Tree Display for CDS: OVOC8391
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| OVOC8391 | SMap | S_parent | Sequence | OVOC_OM3_75 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (64) | |||||
| DB_info | DB_remark | OVO-DIG-1 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00047 (Immunoglobulin domain), PF00092 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR001881 (EGF-like calcium-binding domain), IPR002035 (von Willebrand factor, type A), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000742 (EGF-like domain), IPR013783 (Immunoglobulin-like fold), IPR011041 (Soluble quinoprotein glucose/sorbosone dehydrogenase), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily), IPR013151 (Immunoglobulin) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00245200 | ||||
| Corresponding_transcript | OVOC8391.1 | |||||
| Corresponding_protein | OVP11296 | |||||
| Brief_identification | Mesocentin homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 6.91117 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 2.98578 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 29.8706 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 35.676 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 3.45889 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 9.79025 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
