WormBase Tree Display for CDS: PPA01667
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| PPA01667 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (243) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S60-35.17 | ||
| DB_remark | PPA-UNC-89 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00069 (Protein kinase domain), PF00621 (RhoGEF domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000219 (Dbl homology (DH) domain), IPR013098 (Immunoglobulin I-set), IPR035899 (Dbl homology (DH) domain superfamily), IPR001452 (SH3 domain), IPR013783 (Immunoglobulin-like fold), IPR000719 (Protein kinase domain), IPR011993 (PH-like domain superfamily), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00091221 | ||||
| Corresponding_transcript | PPA01667.1 | |||||
| Corresponding_protein | PP61268 | |||||
| Corresponding_oligo_set (22) | ||||||
| Microarray_results (22) | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.54812 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.498582 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S60-35.17 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
