WormBase Tree Display for CDS: PPA02401
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| PPA02401 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrIII | |||
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S50-11.8 | ||
| DB_remark | PPA-CNK-1 protein; contains similarity to Pfam domains PF00169 (PH domain), PF10534 (Connector enhancer of kinase suppressor of ras), PF17820 (PDZ domain); contains similarity to Interpro domains IPR041489 (PDZ domain 6), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR017874 (CRIC domain), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily), IPR013761 (Sterile alpha motif/pointed domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00091955 | ||||
| Corresponding_transcript | PPA02401.1 | |||||
| Corresponding_protein | PP26801 | |||||
| Corresponding_oligo_set | GPL14372_Probes_41272 | |||||
| Microarray_results | GPL14372_Probes_41272 | |||||
| RNASeq_FPKM | WBls:0000032 | 1.61291 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S50-11.8 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
