WormBase Tree Display for CDS: PPA07215
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PPA07215 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (141) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S233-19.74 | ||
DB_remark | contains similarity to Pfam domains PF00002 (7 transmembrane receptor (Secretin family)), PF00017 (SH2 domain), PF00856 (SET domain), PF08399 (VWA N-terminal), PF10170 (Cysteine-rich domain), PF13519 (von Willebrand factor type A domain), PF13768 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR001214 (SET domain), IPR036860 (SH2 domain superfamily), IPR036465 (von Willebrand factor A-like domain superfamily), IPR000832 (GPCR, family 2, secretin-like), IPR036028 (SH3-like domain superfamily), IPR013608 (VWA N-terminal), IPR002035 (von Willebrand factor, type A), IPR001452 (SH3 domain), IPR018785 (Cysteine-rich domain, DPF-motif), IPR000980 (SH2 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096769 | ||||
Corresponding_transcript | PPA07215.1 | |||||
Corresponding_protein | PP63317 | |||||
Corresponding_oligo_set (36) | ||||||
Matching_cDNA | FE935918 | Inferred_automatically | transcript_builder.pl | |||
FG106343 | Inferred_automatically | transcript_builder.pl | ||||
FG102209 | Inferred_automatically | transcript_builder.pl | ||||
FG105513 | Inferred_automatically | transcript_builder.pl | ||||
AW144990 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (36) | ||||||
RNASeq_FPKM | WBls:0000032 | 7.93305 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.7099 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S233-19.74 | Curator_confirmed | WBPerson4055 | |||
Method | curated |