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WormBase Tree Display for CDS: PPA07215

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Name Class

PPA07215SMapS_parentSequencePPA_ChrIV
StructureSource_exons (141)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S233-19.74
DB_remarkcontains similarity to Pfam domains PF00002 (7 transmembrane receptor (Secretin family)), PF00017 (SH2 domain), PF00856 (SET domain), PF08399 (VWA N-terminal), PF10170 (Cysteine-rich domain), PF13519 (von Willebrand factor type A domain), PF13768 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR001214 (SET domain), IPR036860 (SH2 domain superfamily), IPR036465 (von Willebrand factor A-like domain superfamily), IPR000832 (GPCR, family 2, secretin-like), IPR036028 (SH3-like domain superfamily), IPR013608 (VWA N-terminal), IPR002035 (von Willebrand factor, type A), IPR001452 (SH3 domain), IPR018785 (Cysteine-rich domain, DPF-motif), IPR000980 (SH2 domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00096769
Corresponding_transcriptPPA07215.1
Corresponding_proteinPP63317
Corresponding_oligo_set (36)
Matching_cDNAFE935918Inferred_automaticallytranscript_builder.pl
FG106343Inferred_automaticallytranscript_builder.pl
FG102209Inferred_automaticallytranscript_builder.pl
FG105513Inferred_automaticallytranscript_builder.pl
AW144990Inferred_automaticallytranscript_builder.pl
Microarray_results (36)
RNASeq_FPKMWBls:00000327.93305From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.7099From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S233-19.74Curator_confirmedWBPerson4055
Methodcurated