WormBase Tree Display for CDS: PPA08473
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PPA08473 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2864-5.32 | ||
DB_remark | PPA-UNC-16 protein; contains similarity to Pfam domains PF09744 (JNK_SAPK-associated protein-1), PF16471 (JNK-interacting protein leucine zipper II); contains similarity to Interpro domains IPR019143 (JNK/Rab-associated protein-1, N-terminal), IPR032486 (JNK-interacting protein, leucine zipper II), IPR011047 (Quinoprotein alcohol dehydrogenase-like superfamily), IPR039911 (JNK-interacting protein 3/4) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00098027 | ||||
Corresponding_transcript | PPA08473.1 | |||||
Corresponding_protein | PP58614 | |||||
Corresponding_oligo_set | GPL14372_Probes_27999 | |||||
GPL14372_Probes_28000 | ||||||
GPL14372_Probes_28001 | ||||||
Microarray_results | GPL14372_Probes_27999 | |||||
GPL14372_Probes_28000 | ||||||
GPL14372_Probes_28001 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2864-5.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |