WormBase Tree Display for CDS: PPA17893
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PPA17893 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (46) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2874-6.44 | ||
DB_remark | contains similarity to Pfam domains PF00069 (Protein kinase domain), PF02214 (BTB/POZ domain), PF03607 (Doublecortin); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000210 (BTB/POZ domain), IPR001680 (WD40 repeat), IPR000719 (Protein kinase domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR003533 (Doublecortin domain), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR036572 (Doublecortin domain superfamily), IPR003131 (Potassium channel tetramerisation-type BTB domain), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00107447 | ||||
Corresponding_transcript | PPA17893.1 | |||||
Corresponding_protein | PP70212 | |||||
Corresponding_oligo_set | GPL14372_Probes_21149 | |||||
GPL14372_Probes_21150 | ||||||
GPL14372_Probes_73099 | ||||||
GPL14372_Probes_73101 | ||||||
GPL14372_Probes_73102 | ||||||
GPL14372_Probes_73103 | ||||||
GPL14372_Probes_73104 | ||||||
GPL14372_Probes_73105 | ||||||
Microarray_results | GPL14372_Probes_21149 | |||||
GPL14372_Probes_21150 | ||||||
GPL14372_Probes_73099 | ||||||
GPL14372_Probes_73101 | ||||||
GPL14372_Probes_73102 | ||||||
GPL14372_Probes_73103 | ||||||
GPL14372_Probes_73104 | ||||||
GPL14372_Probes_73105 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.16256 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2874-6.44 | Curator_confirmed | WBPerson4055 | |||
Method | curated |