WormBase Tree Display for CDS: PPA22436
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PPA22436 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 39 | |||
710 | 769 | |||||
2557 | 2618 | |||||
3064 | 3148 | |||||
3691 | 3766 | |||||
4011 | 4123 | |||||
4280 | 4414 | |||||
4748 | 4869 | |||||
5149 | 5218 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-12.21 | ||
TREEFAM | TREEFAM_ID | TF318243 | ||||
DB_remark | PPA-UNC-98 protein; contains similarity to Pfam domain PF00096 (Zinc finger, C2H2 type); contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111990 | ||||
Corresponding_transcript | PPA22436.1 | |||||
Corresponding_protein | PP51210 | |||||
Corresponding_oligo_set | GPL14372_Probes_6977 | |||||
GPL14372_Probes_6978 | ||||||
GPL14372_Probes_6979 | ||||||
GPL14372_Probes_6981 | ||||||
Microarray_results | GPL14372_Probes_6977 | |||||
GPL14372_Probes_6978 | ||||||
GPL14372_Probes_6979 | ||||||
GPL14372_Probes_6981 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-12.21 | Curator_confirmed | WBPerson4055 | |||
Method | curated |