WormBase Tree Display for CDS: PPA24170
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| PPA24170 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (42) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2838-29.79 | ||
| DB_remark | PPA-SORB-1 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF14604 (Variant SH3 domain), PF17820 (PDZ domain); contains similarity to Interpro domains IPR041489 (PDZ domain 6), IPR036028 (SH3-like domain superfamily), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR001452 (SH3 domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00113724 | ||||
| Corresponding_transcript | PPA24170.1 | |||||
| Corresponding_protein | PP70227 | |||||
| Corresponding_oligo_set | GPL14372_Probes_44542 | |||||
| GPL14372_Probes_44543 | ||||||
| GPL14372_Probes_44545 | ||||||
| GPL14372_Probes_44546 | ||||||
| GPL14372_Probes_4636 | ||||||
| GPL14372_Probes_4637 | ||||||
| GPL14372_Probes_4638 | ||||||
| GPL14372_Probes_4639 | ||||||
| Microarray_results | GPL14372_Probes_4636 | |||||
| GPL14372_Probes_4637 | ||||||
| GPL14372_Probes_4638 | ||||||
| GPL14372_Probes_4639 | ||||||
| GPL14372_Probes_44542 | ||||||
| GPL14372_Probes_44543 | ||||||
| GPL14372_Probes_44545 | ||||||
| GPL14372_Probes_44546 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.26233 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.03345 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2838-29.79 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
