WormBase Tree Display for Sequence: R07D5

R07D5 DNA: R07D5 24629
  SMap: S_child: Gene_child: WBGene00200026 14549 14689
        WBGene00201791 4110 3988
        WBGene00197989 21597 21735
        WBGene00200679 12484 12620
        WBGene00195580 23517 23638
        WBGene00196247 18036 18170
        WBGene00199254 18167 18033
      CDS_child: R07D5.1a 14526 8774
        R07D5.1b 12400 8774
        R07D5.1c 11970 8774
        R07D5.1f 21547 8774
        R07D5.1g 21547 8774
        R07D5.1h 18761 8774
        R07D5.1i 18761 8774
        R07D5.1j 14526 8774
        R07D5.2:wp131 3562 123
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g83_x31_X_m 14127 12065
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g82_x31_X_m 9664 9575
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g94_x31_X_m 8914 8864
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g97_x31_X_m 3429 2436
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g128_x31_X_m 185 132
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g98_x31_X_m 365 294
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g34_x31_X_m 11739 8777
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g42_x31_X_m 12008 11908
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g73_x31_X_m 1765 1371
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g34s1k174_x31_X_m 14526 11538
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g103_x31_X_m 1869 1772
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g115_x31_X_m 1394 324
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g30_x31_X_m 14526 8777
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g40_x31_X_m 11970 11905
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g51_x31_X_m 9942 8777
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g34_x31_X_m 11739 10151
        RNASEQ_embryo_him-8_20dC_post-L1_g67_x31_X_m 14526 14386
        RNASEQ_embryo_him-8_20dC_post-L1_g43_x31_X_m 1702 1419
        RNASEQ_embryo_him-8_20dC_post-L1_g36_x31_X_m 11739 8777
        RNASEQ_embryo_him-8_20dC_post-L1_g50s1k89_x31_X_m 14526 11872
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g49_x31_X_m 11739 8777
        RNASEQ_L4_soma_JK1107_no_DNaseI_g77_x31_X_m 9858 9572
        RNASEQ_L4_soma_JK1107_no_DNaseI_g148_x31_X_m 1586 1443
        RNASEQ_L4_soma_JK1107_no_DNaseI_g75_x31_X_m 14358 12095
        RNASEQ_L4_soma_JK1107_no_DNaseI_g104_x31_X_m 11739 10214
        RNASEQ_L4_soma_JK1107_no_DNaseI_g135_x31_X_m 8914 8828
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g129_x31_X_m 1702 1593
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g100_x31_X_m 1765 1715
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g24n11_x31_X_m 14526 8777
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g116_x31_X_m 2477 2427
        RNASEQ_early_embryo_g30_x31_X_m 11970 8777
        RNASEQ_early_embryo_g73_x31_X_m 14526 14461
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30n11_x31_X_m 14526 8777
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g29_x31_X_m 14526 8777
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g103_x31_X_m 1765 132
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g101_x31_X_m 2477 2421
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g49s1k91_x31_X_m 14526 8777
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g117_x31_X_m 1603 1535
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g123_x31_X_m 3444 2439
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g59_x31_X_m 11970 8777
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g120_x31_X_m 2163 1990
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g91_x31_X_m 2448 2234
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g89_x31_X_m 11685 10390
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g92_x31_X_m 9858 9557
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g109_x31_X_m 10383 10184
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g102_x31_X_m 11970 11719
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g123_x31_X_m 14391 14119
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g81_x31_X_m 10099 9898
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g110_x31_X_m 2477 2430
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g73_x31_X_m 1699 1419
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g117_x31_X_m 2169 1990
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g153_x31_X_m 1765 1715
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g158_x31_X_m 9933 9823
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g101_x31_X_m 10452 10211
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g52n11_x31_X_m 2478 2261
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g87_x31_X_m 14369 14076
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g89_x31_X_m 10423 10287
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g74_x31_X_m 2097 1909
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g60_x31_X_m 1765 1401
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g106_x31_X_m 11619 10456
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g134_x31_X_m 9604 9557
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g87_x31_X_m 10383 10184
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g78_x31_X_m 11685 10387
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g77_x31_X_m 9664 9575
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g96_x31_X_m 11739 11692
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g102_x31_X_m 2477 2421
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48_x31_X_m 14127 12065
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g83_x31_X_m 10099 9901
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g128_x31_X_m 1682 1576
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g61_x31_X_m 9858 8777
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g53_x31_X_m 14127 12071
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g71_x31_X_m 10452 10127
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g95_x31_X_m 1556 1401
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g80_x31_X_m 11970 11722
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g69_x31_X_m 8252 8199
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g116_x31_X_m 10395 10244
        R07D5.gc1 3562 259
        R07D5.gc2 12139 8774
        ContigX.elegans.jigsaw.2442.mRNA2442 14580 7815
        AG1201_R07D5.2.T1 2478 1867
        AG1201_R07D5.1.T16 11970 8774
        AG1201_R07D5.1.T15 12400 8774
        AG1201_R07D5.1.T10 14526 8774
        AG1201_R07D5.1.T7 14526 8774
        AG1201_R07D5.1.T12 18761 8774
        AG1201_R07D5.1.T14 21547 8774
        AG1201_R07D5.1.T1 14127 12065
      Transcript (14)
      PCR_product: cenix:114-b4 1066 2306
        cenix:140-h9 9552 10437
        mv_CAA79529 8777 14525
        mv_R07D5.2 125 3561
        p_R07D5.1_93 14527 16526
        sjj_R07D5.1 8779 10461
        sjj_R07D5.2 1339 2453
      Allele (421)
      Oligo_set: Aff_R07D5.1 10207 8774
        Aff_R07D5.2 1917 123
      Feature_object (69)
      Feature_data: R07D5:TranscriptionallyActiveRegion 1 24629
        R07D5:ChIPSeqTF 1 24629
        R07D5:TRF 1 24629
        R07D5:Dust 1 24629
        R07D5:inverted 1 24629
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: C11G10 24526
    Overlap_left: F09B12
    Clone_left_end: R07D5 1
      C11G10 24526
    Clone_right_end: F09B12 12426
  DB_info: Database: EMBL NDB_AC Z70685
        NDB_SV Z70685.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Smye R
    From_laboratory: HX
    Date_directory: 951024
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: R07D5
  Properties: Genomic_canonical
    Checksum: MD5: 52e3a7c8fd47520537618270de1ca09c
    Status: Finished: 24 Oct 1995 00:00:00
      Submitted: 06 Apr 1996 00:00:00
      Annotated: 03 Apr 1996 00:00:00
  Map: Sequence-X Ends: Left: 8243
        Right: 8261
  Interpolated_map_position: X 22.0129
  Assembly_tags: Finished Left 1 1
    Clone right end 12423 12426 F09B12
    annotation 13906 13909 sequence unclear on this region
      13911 13934 unsure about the number of C's here.
    Finished Right 24629 24629
    Clone left end 1 6 R07D5 left hand end.
      24526 24529 C11G10 left hand end.
  Method: Genomic_canonical