WormBase Tree Display for CDS: T10B10.1
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| T10B10.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T10B10 | |||
| Structure | Source_exons | 1 | 802 | |||
| 873 | 1357 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q22369 | ||
| UniProt | UniProtAcc | Q22369 | ||||
| UniProt_GCRP | UniProtAcc | Q22369 | ||||
| AlphaFold | entry | Q22369 | ||||
| NCBI_protein | GI_number | GI:3879748 | ||||
| TREEFAM | TREEFAM_ID | TF319043 | ||||
| Protein_id | CHROMOSOME_X | CAA96674 | 1 | |||
| DB_remark | COL-41 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000618 | ||||
| Corresponding_transcript | T10B10.1.1 | |||||
| Corresponding_protein | CE06399 | |||||
| Corresponding_PCR_product | cenix:119-e4 | |||||
| cenix:176-d8 | ||||||
| mv_T10B10.1 | ||||||
| mv_T10B10.2 | ||||||
| sjj_T10B10.1 | ||||||
| sjj_T10B10.2 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA (33) | ||||||
| RNAi_result | WBRNAi00035404 | |||||
| WBRNAi00115374 | ||||||
| WBRNAi00052984 | ||||||
| WBRNAi00052985 | ||||||
| WBRNAi00035405 | ||||||
| WBRNAi00001437 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q22369 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
