WormBase Tree Display for CDS: T12F5.4
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| T12F5.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T12F5 | |||
| Structure | Source_exons | 1 | 57 | |||
| 1897 | 2217 | |||||
| 2481 | 2806 | |||||
| 3179 | 3704 | |||||
| 3759 | 5197 | |||||
| 5247 | 5415 | |||||
| 5805 | 6719 | |||||
| 7112 | 7297 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.1.1.- | ||
| SwissProt | UniProtAcc | O44757 | ||||
| UniProt | UniProtAcc | O44757 | ||||
| UniProt_GCRP | UniProtAcc | O44757 | ||||
| AlphaFold | entry | O44757 | ||||
| NCBI_protein | GI_number | GI:373219731 | ||||
| TREEFAM | TREEFAM_ID | TF352219 | ||||
| Protein_id | CHROMOSOME_I | CCD69785 | 1 | |||
| DB_remark | LIN-59 protein; contains similarity to Pfam domains PF00628 (PHD-finger), PF00856 (SET domain), PF01426 (BAH domain); contains similarity to Interpro domains IPR001214 (SET domain), IPR046341 (SET domain superfamily), IPR001025 (Bromo adjacent homology (BAH) domain), IPR043151 (Bromo adjacent homology (BAH) domain superfamily), IPR011011 (Zinc finger, FYVE/PHD-type), IPR006560 (AWS domain), IPR019787 (Zinc finger, PHD-finger), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00003040 | ||||
| Corresponding_transcript | T12F5.4.1 | |||||
| Corresponding_protein | CE13601 | |||||
| Corresponding_PCR_product | cenix:76-f4 | |||||
| mv_AAD49324 | ||||||
| sjj_T12F5.4 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (56) | ||||||
| RNAi_result (19) | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Probable histone-lysine N-methyltransferase lin-59 | Accession_evidence | UniProt | SP:O44757 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf000089 | |||||
| Method | curated |
