WormBase Tree Display for CDS: W05B2.5
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| W05B2.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W05B2 | |||
| Structure | Source_exons | 1 | 81 | |||
| 139 | 972 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9U348 | ||
| UniProt | UniProtAcc | Q9U348 | ||||
| UniProt_GCRP | UniProtAcc | Q9U348 | ||||
| AlphaFold | entry | Q9U348 | ||||
| NCBI_protein | GI_number | GI:6580246 | ||||
| Protein_id | CHROMOSOME_III | CAB63321 | 1 | |||
| DB_remark | COL-93 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00000668 | ||||
| Corresponding_transcript | W05B2.5.1 | |||||
| Corresponding_protein | CE20147 | |||||
| Corresponding_PCR_product | TH:323C6 | |||||
| cenix:323-c6 | ||||||
| mv_W05B2.5 | ||||||
| sjj_W05B2.5 | ||||||
| Corresponding_oligo_set | 171756_x_at | |||||
| 171770_x_at | ||||||
| 172197_x_at | ||||||
| 172209_x_at | ||||||
| A_12_P103764 | ||||||
| Aff_W05B2.5 | ||||||
| GPL19516_CGZ0038423 | ||||||
| GPL21109_W05B2.5 | ||||||
| GPL3518_CE20147 | ||||||
| GPL8304_CE_WBGene00000669_A | ||||||
| Matching_cDNA (1002) | ||||||
| RNAi_result (28) | ||||||
| Microarray_results (12) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q9U348 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
