WormBase Tree Display for Gene: WBGene00000014
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| WBGene00000014 | SMap | S_parent | Sequence | F54B8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | abf-3 | |||||||
| Sequence_name | F54B8.5 | ||||||||
| Molecular_name | F54B8.5 | ||||||||
| F54B8.5.1 | |||||||||
| CE16107 | |||||||||
| Other_name | CELE_F54B8.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | abf-3 | ||||||||
| DB_info | Database | AceView | gene | 5Q296 | |||||
| WormQTL | gene | WBGene00000014 | |||||||
| WormFlux | gene | WBGene00000014 | |||||||
| NDB | locus_tag | CELE_F54B8.5 | |||||||
| NCBI | gene | 186202 | |||||||
| RefSeq | protein | NM_074549.1 | |||||||
| TREEFAM | TREEFAM_ID | TF319818 | |||||||
| TrEMBL | UniProtAcc | O45563 | |||||||
| UniProt_GCRP | UniProtAcc | O45563 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abf | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00033118 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00106028 | ||||||||
| 00106029 | |||||||||
| 00106030 | |||||||||
| 00106031 | |||||||||
| 00106032 | |||||||||
| Ortholog (11) | |||||||||
| Paralog | WBGene00000016 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00000017 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00000015 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00012634 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | abf-3 encodes a homolog of the antibacterial factor ASABF from Ascaris suum; ABF-3 may play a role in innate immunity, though at present the only evidence for its having an antimicrobial humoral function is its sequence similarity. | Paper_evidence | WBPaper00005130 | |||||
| WBPaper00013575 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-negative bacterium and innate immune response. Expressed in intestine and rectal gland cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54B8.5 | |||||||
| Corresponding_transcript | F54B8.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00075951 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015580 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048238 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4721 | ||||||||
| Expr1018337 | |||||||||
| Expr1152044 | |||||||||
| Drives_construct | WBCnstr00012198 | ||||||||
| WBCnstr00015899 | |||||||||
| WBCnstr00037797 | |||||||||
| Construct_product | WBCnstr00012198 | ||||||||
| WBCnstr00037797 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (27) | |||||||||
| Interaction | WBInteraction000200889 | ||||||||
| WBInteraction000237996 | |||||||||
| WBInteraction000409750 | |||||||||
| WBInteraction000425220 | |||||||||
| Map_info | Map | V | Position | 8.96195 | Error | 0.000746 | |||
| Positive | Positive_clone | F54B8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003925 | ||||||||
| WBPaper00023115 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00025180 | |||||||||
| WBPaper00029438 | |||||||||
| WBPaper00055320 | |||||||||
| WBPaper00061774 | |||||||||
| WBPaper00064781 | |||||||||
| WBPaper00065681 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
