WormBase Tree Display for Gene: WBGene00000196
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| WBGene00000196 | SMap | S_parent | Sequence | W02B12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aars-1 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | W02B12.6 | ||||||||
| Molecular_name | W02B12.6a | ||||||||
| W02B12.6a.1 | |||||||||
| CE28096 | |||||||||
| W02B12.6b | |||||||||
| Other_name | alas | Accession_evidence | EMBL | AF188715 | |||||
| ars-1 | |||||||||
| CELE_W02B12.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | aars-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | aars-1 | ||||
| Other_name | ars-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aars | ||||||||
| Allele (86) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00000197 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ars-1 encodes an alanyl tRNA synthetase; on the basis of similarity to S. cerevisiae ALA1p, ARS-1 is probably cytoplasmic. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable alanine-tRNA ligase activity and aminoacyl-tRNA editing activity. Predicted to be involved in alanyl-tRNA aminoacylation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 8 and progressive leukoencephalopathy with ovarian failure. Is an ortholog of human AARS2 (alanyl-tRNA synthetase 2, mitochondrial). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111479 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21022) | ||||
| DOID:0070396 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21022) | ||||||
| Molecular_info | Corresponding_CDS | W02B12.6a | |||||||
| Corresponding_CDS_history | W02B12.6:wp52 | ||||||||
| Corresponding_transcript | W02B12.6b | ||||||||
| W02B12.6a.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf650578 | ||||||||
| WBsf650579 | |||||||||
| WBsf666140 | |||||||||
| WBsf666141 | |||||||||
| WBsf989766 | |||||||||
| WBsf989767 | |||||||||
| WBsf989768 | |||||||||
| WBsf223938 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036174 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019490 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054558 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097773 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026453 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023414 | ||||||||
| Expr1030115 | |||||||||
| Expr1158107 | |||||||||
| Expr2009062 | |||||||||
| Expr2027298 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | II | Position | 3.47821 | Error | 0.002605 | |||
| Positive | Positive_clone | W02B12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00014089 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065116 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
