WormBase Tree Display for Gene: WBGene00000487
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WBGene00000487 | SMap | S_parent | Sequence | C23H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | che-6 | Person_evidence | WBPerson261 | |||||
WBPerson260 | |||||||||
Sequence_name | C23H5.7 | ||||||||
Molecular_name | C23H5.7 | ||||||||
C23H5.7.1 | |||||||||
CE52177 | |||||||||
Other_name | cng-4 | Person_evidence | WBPerson260 | ||||||
CELE_C23H5.7 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | che-6 | ||||||||
DB_info | Database | WormFlux | gene | WBGene00000487 | |||||
NDB | locus_tag | CELE_C23H5.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000487|UniProtKB=O61827 | |||||||
family | PTHR45638 | ||||||||
NCBI | gene | 182823 | |||||||
RefSeq | protein | NM_001356910.3 | |||||||
TREEFAM | TREEFAM_ID | TF319048 | |||||||
TrEMBL | UniProtAcc | O61827 | |||||||
UniProt_GCRP | UniProtAcc | O61827 | |||||||
OMIM | gene | 123825 | |||||||
600053 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 15 Aug 2012 10:29:53 | WBPerson2970 | Event | Acquires_merge | WBGene00016026 | ||||
Name_change | Sequence_name | C23H5.7 | |||||||
Other_name | cng-4 | ||||||||
Acquires_merge | WBGene00016026 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | che | ||||||||
Reference_allele | WBVar00143765 | ||||||||
Allele (165) | |||||||||
Legacy_information | e1126 : non-chemotactic to chloride ion; abnormal IL2 basal bodies. ES1 ME3. NA1. | ||||||||
See also e1126 | |||||||||
[C.elegansII] e1126 : non-chemotactic to chloride ion; abnormal IL2 basal bodies. ES1 ME3. NA1. [Lewis and Hodgkin 1977] | |||||||||
Strain | WBStrain00022728 | ||||||||
WBStrain00022733 | |||||||||
WBStrain00004250 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00006526 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000562 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000563 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00022295 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001171 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006830 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Located in neuronal cell body. Expressed in ASEL; ASER; AWCL; and AWCR. Human ortholog(s) of this gene implicated in achromatopsia 2 and retinitis pigmentosa 49. Is an ortholog of several human genes including CNGA1 (cyclic nucleotide gated channel subunit alpha 1); CNGA2 (cyclic nucleotide gated channel subunit alpha 2); and CNGA3 (cyclic nucleotide gated channel subunit alpha 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:13399 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2150) | ||||
DOID:0110377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2148) | ||||||
DOID:0110007 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2150) | ||||||
DOID:10584 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2148) | ||||||
Molecular_info | Corresponding_CDS | C23H5.7 | |||||||
Corresponding_CDS_history | C23H5.7:wp239 | ||||||||
C23H5.7:wp261 | |||||||||
Corresponding_transcript | C23H5.7.1 | ||||||||
Other_sequence | FG354142.1 | ||||||||
JI168297.1 | |||||||||
Associated_feature | WBsf995623 | ||||||||
WBsf1016860 | |||||||||
Experimental_info | RNAi_result | WBRNAi00076157 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041037 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011068 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr11202 | ||||||||
Expr1145077 | |||||||||
Expr2009967 | |||||||||
Expr2028207 | |||||||||
Drives_construct | WBCnstr00018218 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (53) | |||||||||
Map_info | Map | IV | Position | -11.0452 | |||||
Positive | Positive_clone | C23H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |