WormBase Tree Display for Gene: WBGene00000508
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| WBGene00000508 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F44B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cit-1.2 | |||||||
| Sequence_name | F44B9.3 | ||||||||
| Molecular_name | F44B9.3a | ||||||||
| F44B9.3a.1 | |||||||||
| CE29042 | |||||||||
| F44B9.3b | |||||||||
| CE32417 | |||||||||
| F44B9.3b.1 | |||||||||
| F44B9.3b.2 | |||||||||
| Other_name | CELE_F44B9.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cit-1.2 | ||||||||
| DB_info | Database | AceView | gene | 3J103 | |||||
| WormQTL | gene | WBGene00000508 | |||||||
| WormFlux | gene | WBGene00000508 | |||||||
| NDB | locus_tag | CELE_F44B9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000508|UniProtKB=P34424 | |||||||
| family | PTHR10026 | ||||||||
| NCBI | gene | 176126 | |||||||
| RefSeq | protein | NM_066344.6 | |||||||
| NM_001382929.1 | |||||||||
| SwissProt | UniProtAcc | P34424 | |||||||
| TREEFAM | TREEFAM_ID | TF101014 | |||||||
| UniProt_GCRP | UniProtAcc | P34424 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cit | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00002223 | ||||||||
| WBStrain00035784 | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042247 | ||||||||
| 00042248 | |||||||||
| 00042249 | |||||||||
| 00042250 | |||||||||
| 00042251 | |||||||||
| 00042252 | |||||||||
| 00042253 | |||||||||
| 00042254 | |||||||||
| 00107505 | |||||||||
| 00107506 | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000506 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000507 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000876 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021714 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009650 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cit-1.2 encodes one of two C. elegans cyclin T orthologs; RNAi experiments indicate that CIT-1.2 functions redundantly with CIT-1.1 to broadly regulate embryonic transcription; by homology, CIT-1.1 and CIT-1.2 are predicted to interact with the CDK-9 kinase to form the P-TEFb transcription elongation factor that in C. elegans is required for Ser2, but not Ser5, phosphorylation in the C-terminal domain (CTD) repeat of AMA-1/PolII. | Paper_evidence | WBPaper00005411 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 May 2005 00:00:00 | ||||||||
| Automated_description | Enables cyclin-dependent protein serine/threonine kinase activator activity. Involved in embryo development. Located in nucleus. Expressed in several structures, including head. Is an ortholog of human CCNT1 (cyclin T1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44B9.3a | |||||||
| F44B9.3b | |||||||||
| Corresponding_transcript | F44B9.3a.1 | ||||||||
| F44B9.3b.1 | |||||||||
| F44B9.3b.2 | |||||||||
| Other_sequence | CR07496 | ||||||||
| CRC04081_1 | |||||||||
| CRC03822_1 | |||||||||
| CR05193 | |||||||||
| CR05367 | |||||||||
| Associated_feature | WBsf645379 | ||||||||
| WBsf659221 | |||||||||
| WBsf981517 | |||||||||
| WBsf993218 | |||||||||
| WBsf225326 | |||||||||
| WBsf225327 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr6068 | ||||||||
| Expr11662 | |||||||||
| Expr1018895 | |||||||||
| Expr1030301 | |||||||||
| Expr1151106 | |||||||||
| Expr2010023 | |||||||||
| Expr2028264 | |||||||||
| Drives_construct | WBCnstr00002960 | ||||||||
| WBCnstr00037490 | |||||||||
| Construct_product | WBCnstr00019158 | ||||||||
| WBCnstr00019159 | |||||||||
| WBCnstr00019279 | |||||||||
| WBCnstr00037490 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | III | Position | -0.448098 | Error | 0.000664 | |||
| Positive | Positive_clone | F44B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4220 | |||||||
| 4910 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005411 | ||||||||
| WBPaper00029038 | |||||||||
| WBPaper00031439 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044000 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Blackwell K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
