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WormBase Tree Display for Gene: WBGene00000608

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Name Class

WBGene00000608SMapS_parentSequenceZK1193
IdentityVersion1
NameCGC_namecol-19Person_evidenceWBPerson345
Sequence_nameZK1193.1
Molecular_nameZK1193.1
ZK1193.1.1
CE05126
Other_namecol19Accession_evidenceEMBLM25481
CELE_ZK1193.1Accession_evidenceNDBBX284606
Public_namecol-19
DB_infoDatabaseWormQTLgeneWBGene00000608
WormFluxgeneWBGene00000608
NDBlocus_tagCELE_ZK1193.1
PanthergeneCAEEL|WormBase=WBGene00000608|UniProtKB=P18835
familyPTHR24637
NCBIgene180397
RefSeqproteinNM_001038488.6
SwissProtUniProtAccP18835
TREEFAMTREEFAM_IDTF319043
UniProt_GCRPUniProtAccP18835
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (25)
Legacy_information[C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT]
StrainWBStrain00007918
WBStrain00007932
WBStrain00007933
WBStrain00033323
WBStrain00034928
RNASeq_FPKM (74)
GO_annotation (18)
Ortholog (50)
Paralog (165)
Structured_descriptionConcise_descriptioncol-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals.Paper_evidenceWBPaper00000748
WBPaper00002222
WBPaper00005747
Curator_confirmedWBPerson48
Date_last_updated01 Sep 2004 00:00:00
Automated_descriptionA structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK1193.1
Corresponding_CDS_historyZK1193.1a:wp145
ZK1193.1b:wp145
Corresponding_transcriptZK1193.1.1
Other_sequence (62)
Associated_featureWBsf235261
WBsf235262
Experimental_infoRNAi_result (14)
Expr_pattern (13)
Drives_construct (40)
Construct_productWBCnstr00000750
WBCnstr00004851
WBCnstr00010258
WBCnstr00011689
WBCnstr00012421
WBCnstr00037431
Microarray_results (21)
Expression_cluster (272)
InteractionWBInteraction000003085
WBInteraction000003095
WBInteraction000003181
WBInteraction000003279
WBInteraction000003548
WBInteraction000003674
WBInteraction000029439
WBInteraction000030145
WBInteraction000030146
WBInteraction000030147
WBInteraction000051073
WBInteraction000051119
WBInteraction000051165
WBInteraction000051211
WBInteraction000051257
WBInteraction000051303
WBInteraction000051349
WBInteraction000102671
WBInteraction000103405
WBInteraction000104138
WBInteraction000104770
WBInteraction000115756
WBInteraction000121765
WBInteraction000121932
WBInteraction000122000
WBInteraction000126096
WBInteraction000126626
WBInteraction000126682
WBInteraction000126695
WBInteraction000126823
WBInteraction000126970
WBInteraction000132999
WBInteraction000134437
WBInteraction000137552
WBInteraction000141567
WBInteraction000142022
WBInteraction000142023
WBInteraction000142192
WBInteraction000143800
WBInteraction000144811
WBInteraction000147029
WBInteraction000151393
WBInteraction000152182
WBInteraction000160674
WBInteraction000161280
WBInteraction000161300
WBInteraction000166287
WBInteraction000168207
WBInteraction000172439
WBInteraction000177177
WBInteraction000177731
WBInteraction000179622
WBInteraction000179629
WBInteraction000185197
WBInteraction000186609
WBInteraction000188619
WBInteraction000189722
WBInteraction000191518
WBInteraction000191519
WBInteraction000191958
WBInteraction000192061
WBInteraction000192353
WBInteraction000196877
WBInteraction000199550
WBInteraction000206763
WBInteraction000207320
WBInteraction000208305
WBInteraction000208380
WBInteraction000214039
WBInteraction000214395
WBInteraction000214636
WBInteraction000216633
WBInteraction000217185
WBInteraction000218784
WBInteraction000220429
WBInteraction000222817
WBInteraction000228740
WBInteraction000230107
WBInteraction000231816
WBInteraction000233219
WBInteraction000235794
WBInteraction000236906
WBInteraction000237099
WBInteraction000237715
WBInteraction000241591
WBInteraction000241594
WBInteraction000242214
WBInteraction000242754
WBInteraction000244965
WBInteraction000245757
WBInteraction000246729
WBInteraction000248060
WBInteraction000248845
WBInteraction000250510
WBInteraction000253794
WBInteraction000254960
WBInteraction000257919
WBInteraction000258699
WBInteraction000259996
WBInteraction000260892
WBInteraction000262656
WBInteraction000265437
WBInteraction000265839
WBInteraction000266762
WBInteraction000267611
WBInteraction000274601
WBInteraction000281372
WBInteraction000282853
WBInteraction000283968
WBInteraction000285075
WBInteraction000286089
WBInteraction000288921
WBInteraction000291751
WBInteraction000292567
WBInteraction000293312
WBInteraction000295562
WBInteraction000299102
WBInteraction000301206
WBInteraction000304116
WBInteraction000305581
WBInteraction000305786
WBInteraction000306694
WBInteraction000308370
WBInteraction000308937
WBInteraction000310167
WBInteraction000310924
WBInteraction000312269
WBInteraction000313257
WBInteraction000316404
WBInteraction000317690
WBInteraction000321142
WBInteraction000323252
WBInteraction000323448
WBInteraction000323579
WBInteraction000323751
WBInteraction000323895
WBInteraction000324491
WBInteraction000325985
WBInteraction000326298
WBInteraction000329914
WBInteraction000330898
WBInteraction000332869
WBInteraction000333796
WBInteraction000336550
WBInteraction000341703
WBInteraction000341761
WBInteraction000343199
WBInteraction000348550
WBInteraction000350492
WBInteraction000350589
WBInteraction000354386
WBInteraction000356938
WBInteraction000358495
WBInteraction000358679
WBInteraction000362747
WBInteraction000364804
WBInteraction000365121
WBInteraction000370796
WBInteraction000371135
WBInteraction000372637
WBInteraction000373197
WBInteraction000373383
WBInteraction000380399
WBInteraction000390690
WBInteraction000390957
WBInteraction000393544
WBInteraction000393772
WBInteraction000395371
WBInteraction000396508
WBInteraction000398123
WBInteraction000400694
WBInteraction000401200
WBInteraction000403545
WBInteraction000403959
WBInteraction000411299
WBInteraction000413180
WBInteraction000415393
WBInteraction000416809
WBInteraction000421261
WBInteraction000423301
WBInteraction000424501
WBInteraction000424882
WBInteraction000427000
WBInteraction000427290
WBInteraction000436778
WBInteraction000440005
WBInteraction000441476
WBInteraction000443242
WBInteraction000448372
WBInteraction000451958
WBInteraction000455771
WBInteraction000456641
WBInteraction000460071
WBInteraction000462398
WBInteraction000475067
WBInteraction000504537
WBInteraction000504690
WBInteraction000505000
WBInteraction000505001
WBInteraction000517597
WBInteraction000517599
WBInteraction000517601
WBInteraction000517603
WBInteraction000517605
WBInteraction000517607
WBInteraction000517609
WBInteraction000517611
WBInteraction000517614
WBInteraction000517616
WBInteraction000517618
WBInteraction000517620
WBInteraction000517622
WBInteraction000517624
WBInteraction000517626
WBInteraction000517627
WBInteraction000517628
WBInteraction000517629
WBInteraction000517630
WBInteraction000517631
WBInteraction000517632
WBInteraction000517633
WBInteraction000517634
WBInteraction000517635
WBInteraction000517636
WBInteraction000517637
WBInteraction000517638
WBInteraction000517639
WBInteraction000517640
WBInteraction000517641
WBInteraction000517642
WBInteraction000517643
WBInteraction000517644
WBInteraction000517645
WBInteraction000517646
WBInteraction000517647
WBInteraction000517648
WBInteraction000517649
WBInteraction000517650
WBInteraction000517651
WBInteraction000517652
WBInteraction000517653
WBInteraction000520918
WBInteraction000520919
WBInteraction000520920
WBInteraction000520921
WBInteraction000520922
WBInteraction000520923
WBInteraction000520924
WBInteraction000520925
WBInteraction000520926
WBInteraction000520927
WBInteraction000520928
WBInteraction000520929
WBInteraction000520930
WBInteraction000520931
WBInteraction000520932
WBInteraction000520933
WBInteraction000520934
WBInteraction000520935
WBInteraction000520936
WBInteraction000522083
WBInteraction000537293
WBInteraction000537295
WBInteraction000537297
WBInteraction000537298
WBInteraction000537299
WBInteraction000537300
WBInteraction000537301
WBInteraction000537302
WBInteraction000537303
WBInteraction000537304
WBInteraction000537305
WBInteraction000537306
WBInteraction000537307
WBInteraction000537308
WBInteraction000537309
WBInteraction000537310
WBInteraction000537311
WBInteraction000537312
WBInteraction000537313
WBInteraction000537314
WBInteraction000537315
WBInteraction000537316
WBInteraction000537317
WBInteraction000537318
WBInteraction000537319
WBInteraction000537320
WBInteraction000537321
WBInteraction000537322
WBInteraction000537323
WBInteraction000537324
WBInteraction000537325
WBInteraction000537326
WBInteraction000537327
WBInteraction000541242
WBInteraction000558027
WBInteraction000558028
WBInteraction000563733
Map_infoMapXPosition-19.9103
PositivePositive_cloneZK1193Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (68)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene