WormBase Tree Display for Gene: WBGene00000608
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| WBGene00000608 | SMap | S_parent | Sequence | ZK1193 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-19 | Person_evidence | WBPerson345 | |||||
| Sequence_name | ZK1193.1 | ||||||||
| Molecular_name | ZK1193.1 | ||||||||
| ZK1193.1.1 | |||||||||
| CE05126 | |||||||||
| Other_name | col19 | Accession_evidence | EMBL | M25481 | |||||
| CELE_ZK1193.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | col-19 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000608 | |||||
| WormFlux | gene | WBGene00000608 | |||||||
| NDB | locus_tag | CELE_ZK1193.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000608|UniProtKB=P18835 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 180397 | |||||||
| RefSeq | protein | NM_001038488.6 | |||||||
| SwissProt | UniProtAcc | P18835 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| UniProt_GCRP | UniProtAcc | P18835 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (25) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
| Strain | WBStrain00007918 | ||||||||
| WBStrain00007932 | |||||||||
| WBStrain00007933 | |||||||||
| WBStrain00033323 | |||||||||
| WBStrain00034928 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (50) | |||||||||
| Paralog (165) | |||||||||
| Structured_description | Concise_description | col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00002222 | |||||||||
| WBPaper00005747 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
| Automated_description | A structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1193.1 | |||||||
| Corresponding_CDS_history | ZK1193.1a:wp145 | ||||||||
| ZK1193.1b:wp145 | |||||||||
| Corresponding_transcript | ZK1193.1.1 | ||||||||
| Other_sequence (62) | |||||||||
| Associated_feature | WBsf235261 | ||||||||
| WBsf235262 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (13) | |||||||||
| Drives_construct (40) | |||||||||
| Construct_product | WBCnstr00000750 | ||||||||
| WBCnstr00004851 | |||||||||
| WBCnstr00010258 | |||||||||
| WBCnstr00011689 | |||||||||
| WBCnstr00012421 | |||||||||
| WBCnstr00037431 | |||||||||
| Microarray_results | SMD_COL-19__#2 | ||||||||
| SMD_ZK1193.1 | |||||||||
| 192163_at | |||||||||
| A_12_P106626 | |||||||||
| A_12_P174752 | |||||||||
| Aff_ZK1193.1 | |||||||||
| GPL13394_WBGene00000608 | |||||||||
| GPL13914_ZK1193.1 | |||||||||
| GPL14144_ZK1193.1_164-223_0.829_18_C | |||||||||
| GPL14144_ZK1193.1_696-755_0.943_1_A | |||||||||
| GPL14144_ZK1193.1_777-836_0.871_8_B | |||||||||
| GPL19516_CGZ0056301 | |||||||||
| GPL21109_ZK1193.1 | |||||||||
| GPL3518_CE05126 | |||||||||
| GPL8304_CE_WBGene00000608_A | |||||||||
| GPL8304_CE_WBGene00000608_B | |||||||||
| GPL8673_ZK1193_1P00004 | |||||||||
| GPL8673_ZK1193_1P00014 | |||||||||
| GPL8673_ZK1193_1P00124 | |||||||||
| GPL9450_ZK1193.1 | |||||||||
| cea2.c.49373 | |||||||||
| Expression_cluster (272) | |||||||||
| Interaction (298) | |||||||||
| Map_info | Map | X | Position | -19.9103 | |||||
| Positive | Positive_clone | ZK1193 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (68) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
