WormBase Tree Display for Gene: WBGene00000657
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| WBGene00000657 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F38A3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-81 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F38A3.1 | ||||||||
| Molecular_name | F38A3.1 | ||||||||
| F38A3.1.1 | |||||||||
| CE02213 | |||||||||
| Other_name | CELE_F38A3.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-81 | ||||||||
| DB_info | Database | AceView | gene | 2L302 | |||||
| WormQTL | gene | WBGene00000657 | |||||||
| WormFlux | gene | WBGene00000657 | |||||||
| NDB | locus_tag | CELE_F38A3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000657|UniProtKB=Q20135 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 174686 | |||||||
| RefSeq | protein | NM_063960.5 | |||||||
| TrEMBL | UniProtAcc | Q20135 | |||||||
| UniProt_GCRP | UniProtAcc | Q20135 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00050967 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067282 | ||||||||
| 00067283 | |||||||||
| 00067284 | |||||||||
| 00107653 | |||||||||
| Ortholog (27) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38A3.1 | |||||||
| Corresponding_transcript | F38A3.1.1 | ||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf989576 | ||||||||
| WBsf1013144 | |||||||||
| WBsf223866 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014521 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046666 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031937 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027859 | ||||||||
| Expr1030387 | |||||||||
| Expr1150539 | |||||||||
| Expr2010428 | |||||||||
| Expr2028668 | |||||||||
| Drives_construct | WBCnstr00037393 | ||||||||
| Construct_product | WBCnstr00037393 | ||||||||
| Microarray_results | SMD_F38A3.1 | ||||||||
| 188281_s_at | |||||||||
| A_12_P109253 | |||||||||
| Aff_F38A3.1 | |||||||||
| GPL13394_WBGene00000657 | |||||||||
| GPL13914_F38A3.1 | |||||||||
| GPL14144_F38A3.1_204-263_0.892_5_B | |||||||||
| GPL14144_F38A3.1_4-63_0.813_18_C | |||||||||
| GPL14144_F38A3.1_422-481_0.907_1_A | |||||||||
| GPL19516_CGZ0020336 | |||||||||
| GPL21109_F38A3.1 | |||||||||
| GPL3518_CE02213 | |||||||||
| GPL8304_CE_WBGene00000657_A | |||||||||
| GPL8673_F38A3_1P00088 | |||||||||
| GPL8673_F38A3_1P00112 | |||||||||
| GPL8673_F38A3_1P00275 | |||||||||
| GPL9450_F38A3.1 | |||||||||
| cea2.p.39129 | |||||||||
| Expression_cluster (294) | |||||||||
| Interaction (168) | |||||||||
| Map_info | Map | II | Position | 3.14124 | Error | 0.002429 | |||
| Positive | Positive_clone | F38A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059205 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
