WormBase Tree Display for Gene: WBGene00000657

WBGene00000657 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F38A3
  Identity: Version: 1
    Name: CGC_name: col-81 Person_evidence: WBPerson345
      Sequence_name: F38A3.1
      Molecular_name: F38A3.1
        F38A3.1.1
        CE02213
      Other_name: CELE_F38A3.1 Accession_evidence: NDB BX284602
      Public_name: col-81
    DB_info: Database: AceView gene 2L302
        WormQTL gene WBGene00000657
        WormFlux gene WBGene00000657
        NDB locus_tag CELE_F38A3.1
        Panther gene CAEEL|WormBase=WBGene00000657|UniProtKB=Q20135
          family PTHR24637
        NCBI gene 174686
        RefSeq protein NM_063960.5
        TrEMBL UniProtAcc Q20135
        UniProt_GCRP UniProtAcc Q20135
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (17)
    Strain: WBStrain00050967
    RNASeq_FPKM (74)
    GO_annotation: 00067282
      00067283
      00067284
      00107653
    Ortholog: WBGene00160704 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00053487 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025941 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00119603 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00230675 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6551 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14723 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19827 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1147 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9116 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16588 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2460 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP40.g11575 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-col-81 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16355 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00037.g2012 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17690 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005434 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07861 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13343 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20339000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5856 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241286 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00282255 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258125 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291500 Trichuris muris From_analysis: WormBase-Compara
      RGD:2377 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F38A3.1
    Corresponding_transcript: F38A3.1.1
    Other_sequence (29)
    Associated_feature: WBsf989576
      WBsf1013144
      WBsf223866
  Experimental_info: RNAi_result: WBRNAi00014521 Inferred_automatically: RNAi_primary
      WBRNAi00046666 Inferred_automatically: RNAi_primary
      WBRNAi00031937 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027859
      Expr1030387
      Expr1150539
      Expr2010428
      Expr2028668
    Drives_construct: WBCnstr00037393
    Construct_product: WBCnstr00037393
    Microarray_results (18)
    Expression_cluster (294)
    Interaction (168)
  Map_info: Map: II Position: 3.14124 Error: 0.002429
    Positive: Positive_clone: F38A3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059205
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene