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WormBase Tree Display for Gene: WBGene00000754

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Name Class

WBGene00000754EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceW03G11
IdentityVersion1
NameCGC_namecol-181Person_evidenceWBPerson345
Sequence_nameW03G11.1
Molecular_nameW03G11.1a
W03G11.1a.1
CE26826
W03G11.1b
CE03781
W03G11.1b.1
Other_nameCELE_W03G11.1Accession_evidenceNDBBX284606
Public_namecol-181
DB_infoDatabaseWormQTLgeneWBGene00000754
WormFluxgeneWBGene00000754
NDBlocus_tagCELE_W03G11.1
PanthergeneCAEEL|WormBase=WBGene00000754|UniProtKB=Q23150
familyPTHR24637
NCBIgene181378
RefSeqproteinNM_001047830.5
NM_001047831.4
TrEMBLUniProtAccQ2XN04
Q23150
UniProt_GCRPUniProtAccQ23150
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (29)
RNASeq_FPKM (74)
GO_annotation00077444
00077445
00077446
00107740
OrthologWBGene00036227Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00158491Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00077263Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127593Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00231332Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11816Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10144Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g189Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17929Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6156Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15232Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12111Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13274Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26484Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10880Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00835.g14483Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-col-181Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13387Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00200.g6888Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_023244Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_X0049700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20189Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247025Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00089864Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105662Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275337Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283457Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00291500Trichuris murisFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-050707-1Danio rerioFrom_analysisInparanoid
SonicParanoid
ZFIN:ZDB-GENE-080303-33Danio rerioFrom_analysisInparanoid
SonicParanoid
HGNC:6895Homo sapiensFrom_analysisInparanoid
PhylomeDB
HGNC:14864Homo sapiensFrom_analysisEnsEMBL-Compara
PhylomeDB
RGD:2377Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Paralog (163)
Structured_descriptionConcise_descriptioncol-181 is homologous to the human gene PRO ALPHA 1(I) COLLAGEN (COL1A1; OMIM:120150), which when mutated leads to osteogenesis imperfecta.Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Is an ortholog of human COL5A3 (collagen type V alpha 3 chain) and MARCO (macrophage receptor with collagenous structure).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:2957Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:6895)
Molecular_infoCorresponding_CDSW03G11.1a
W03G11.1b
Corresponding_CDS_historyW03G11.1:wp42
Corresponding_transcriptW03G11.1a.1
W03G11.1b.1
Other_sequence (11)
Associated_featureWBsf648586
WBsf648587
WBsf1007212
WBsf1023989
WBsf236452
Experimental_infoRNAi_resultWBRNAi00036249Inferred_automaticallyRNAi_primary
WBRNAi00019577Inferred_automaticallyRNAi_primary
WBRNAi00054721Inferred_automaticallyRNAi_primary
WBRNAi00007451Inferred_automaticallyRNAi_primary
Expr_patternExpr1010761
Expr1030461
Expr1158258
Expr2010376
Expr2028618
Drives_constructWBCnstr00037304
Construct_productWBCnstr00037304
Microarray_results (24)
Expression_cluster (260)
Interaction (171)
Map_infoMapXPosition7.0052
PositivePositive_cloneW03G11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00032322
WBPaper00038491
WBPaper00055090
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene