WormBase Tree Display for Gene: WBGene00000797
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| WBGene00000797 | Evidence | Paper_evidence | WBPaper00005857 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | AH9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | crn-4 | Person_evidence | WBPerson1606 | |||||
| Sequence_name | AH9.2 | ||||||||
| Molecular_name | AH9.2 | ||||||||
| AH9.2.1 | |||||||||
| CE03858 | |||||||||
| Other_name | CELE_AH9.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | crn-4 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | crn | ||||||||
| Allele (44) | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00001332 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019724 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019825 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | crn-4 encodes a DEDD family DNase, a cell death-related nuclease; crn-4 exhibits both DNase and RNase activities; crn-4 is believed to function in a large multinuclease complex, the degradeosome, whose components include the protein products of cps-6, crn-1, crn-5, cpy-13 and other non-nuclease components like wah-1, to promote apoptotic DNA degradation; crn-4 has been shown to bind DNA through its Zn-domain and cleave it through its N-terminal DEDDh domain; crn-4 interacts with crn-5 in protein binding experiments, this interaction has been shown to enhance crn-4 DNAase activity. | Paper_evidence | WBPaper00005857 | |||||
| WBPaper00032328 | |||||||||
| WBPaper00036712 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 22 Oct 2010 00:00:00 | ||||||||
| Automated_description | Enables nuclease activity and single-stranded DNA binding activity. Involved in RNA catabolic process and apoptotic DNA fragmentation. Predicted to be located in cytoplasm. Is an ortholog of human ERI1 (exoribonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AH9.2 | |||||||
| Corresponding_transcript | AH9.2.1 | ||||||||
| Other_sequence | CRC10371_1 | ||||||||
| Associated_feature | WBsf1004276 | ||||||||
| WBsf1004277 | |||||||||
| WBsf1004278 | |||||||||
| WBsf1022435 | |||||||||
| WBsf237066 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00097988 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009537 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027934 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038628 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00087548 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011892 | ||||||||
| Expr1030496 | |||||||||
| Expr1142836 | |||||||||
| Expr2010539 | |||||||||
| Expr2028779 | |||||||||
| Drives_construct | WBCnstr00037269 | ||||||||
| Construct_product | WBCnstr00037269 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction (16) | |||||||||
| WBProcess | WBbiopr:00000014 | ||||||||
| WBbiopr:00000103 | |||||||||
| Map_info | Map | X | Position | -15.9429 | Error | 0.04732 | |||
| Positive | Positive_clone | AH9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005857 | ||||||||
| WBPaper00006283 | |||||||||
| WBPaper00019408 | |||||||||
| WBPaper00027291 | |||||||||
| WBPaper00032328 | |||||||||
| WBPaper00036712 | |||||||||
| WBPaper00053142 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
