WormBase Tree Display for Gene: WBGene00000862
expand all nodes | collapse all nodes | view schema
| WBGene00000862 | SMap | S_parent | Sequence | K11D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cwp-4 | Person_evidence | WBPerson160 | |||||
| Sequence_name | K11D12.1 | ||||||||
| Molecular_name | K11D12.1 | ||||||||
| K11D12.1.1 | |||||||||
| CE30382 | |||||||||
| Other_name | CELE_K11D12.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cwp-4 | ||||||||
| DB_info | Database | AceView | gene | 5F533 | |||||
| WormQTL | gene | WBGene00000862 | |||||||
| WormFlux | gene | WBGene00000862 | |||||||
| NDB | locus_tag | CELE_K11D12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000862|UniProtKB=O44626 | |||||||
| family | PTHR23362 | ||||||||
| NCBI | gene | 178894 | |||||||
| RefSeq | protein | NM_071955.7 | |||||||
| TREEFAM | TREEFAM_ID | TF317671 | |||||||
| TrEMBL | UniProtAcc | O44626 | |||||||
| UniProt_GCRP | UniProtAcc | O44626 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cwp | ||||||||
| Allele (69) | |||||||||
| Strain | WBStrain00032585 | ||||||||
| WBStrain00035426 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Structured_description | Concise_description | cwp-4 encodes a protein with some similarity to mucins that is predicted to be secreted, and is alleged to be coexpressed with polycystins; CWP-4 is dispensable for viability and gross morphology in mass RNAi screens. | Paper_evidence | WBPaper00002356 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00013633 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in head mesodermal cell; neurons; and ray based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; daf-12; and pgl-1 based on tiling array; microarray; and RNA-seq studies. Is affected by Sodium Chloride and antimycin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K11D12.1 | |||||||
| Corresponding_transcript | K11D12.1.1 | ||||||||
| Other_sequence | Acan_isotig04099 | ||||||||
| EB747542.1 | |||||||||
| TX01849 | |||||||||
| GO239583.1 | |||||||||
| JI173447.1 | |||||||||
| MAC03153_1 | |||||||||
| Acan_isotig01853 | |||||||||
| FC814203.1 | |||||||||
| Associated_feature | WBsf231726 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00050582 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065255 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107230 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017006 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2961 | ||||||||
| Expr1027484 | |||||||||
| Expr1154289 | |||||||||
| Expr2010642 | |||||||||
| Expr2028882 | |||||||||
| Drives_construct | WBCnstr00011046 | ||||||||
| WBCnstr00037241 | |||||||||
| Construct_product | WBCnstr00037241 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | V | Position | -3.56082 | Error | 0.124203 | |||
| Positive | Positive_clone | K11D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4492 | |||||||
| 4718 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010720 | ||||||||
| WBPaper00010780 | |||||||||
| WBPaper00013489 | |||||||||
| WBPaper00019049 | |||||||||
| WBPaper00026095 | |||||||||
| WBPaper00030288 | |||||||||
| WBPaper00034005 | |||||||||
| WBPaper00036024 | |||||||||
| WBPaper00063946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
