WormBase Tree Display for Gene: WBGene00000895
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WBGene00000895 | SMap | S_parent | Sequence | B0412 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | dac | ||||||
Allele (159) | |||||||
Strain | WBStrain00001324 | ||||||
WBStrain00001325 | |||||||
WBStrain00035649 | |||||||
WBStrain00035733 | |||||||
WBStrain00035736 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00021457 | ||||||
00021458 | |||||||
00021459 | |||||||
00021460 | |||||||
00021461 | |||||||
00021462 | |||||||
00021463 | |||||||
00021464 | |||||||
00021465 | |||||||
Ortholog (36) | |||||||
Structured_description | Concise_description | dac-1 encodes the C. elegans ortholog of Dachshund, a transcriptional regulator first described in Drosophila that is a member of the SKI/SNO/DAC family of proteins; dac-1 is expressed at higher levels in the AFD thermosensory neurons as compared to the AWB olfactory neurons and likely plays a role in thermosensory behavior as on thermal gradients dac-1 mutants fail to suppress cryophilic drive but continue to track isotherms at the cultivation temperature; a DAC-1::GFP fusion protein is nuclear and expressed strongly in the AFD thermosensory neurons, but weakly in the AWC, ASE, and ASK chemosensory neurons; expression is also seen in alae and additional, unidentified tail cells; dac-1 expression in AFD is positively regulated by the TTX-1 OTX-like homeodomain protein. | Paper_evidence | WBPaper00024671 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 21 May 2007 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in thermotaxis. Located in nucleus. Expressed in amphid neurons; cuticular ala; and tail. Is an ortholog of human DACH1 (dachshund family transcription factor 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0412.1a | |||||
B0412.1b | |||||||
Corresponding_CDS_history | B0412.1b:wp120 | ||||||
B0412.1b:wp123 | |||||||
Corresponding_transcript | B0412.1a.1 | ||||||
B0412.1b.1 | |||||||
Other_sequence | Dviv_isotig11489 | ||||||
SSC00720_1 | |||||||
Dviv_isotig11488 | |||||||
SS02097 | |||||||
Associated_feature | WBsf658584 | ||||||
WBsf978943 | |||||||
WBsf224400 | |||||||
Transcription_factor | WBTranscriptionFactor000635 | ||||||
Experimental_info | RNAi_result | WBRNAi00028128 | Inferred_automatically | RNAi_primary | |||
WBRNAi00009756 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006647 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110961 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039031 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram2070 | ||||||
Expr3130 | |||||||
Expr5066 | |||||||
Expr7403 | |||||||
Expr1015167 | |||||||
Expr1143193 | |||||||
Expr1200045 | |||||||
Expr2010758 | |||||||
Expr2028995 | |||||||
Drives_construct | WBCnstr00002217 | ||||||
WBCnstr00002218 | |||||||
WBCnstr00011158 | |||||||
WBCnstr00012546 | |||||||
WBCnstr00037214 | |||||||
Construct_product | WBCnstr00011158 | ||||||
WBCnstr00016702 | |||||||
WBCnstr00037214 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (120) | |||||||
Interaction (95) | |||||||
WBProcess | WBbiopr:00000010 | ||||||
Map_info | Map | III | Position | -25.7793 | Error | 0.003862 | |
Positive | Positive_clone | B0412 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4251 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00010874 | ||||||
WBPaper00024524 | |||||||
WBPaper00024671 | |||||||
WBPaper00026952 | |||||||
WBPaper00027309 | |||||||
WBPaper00033137 | |||||||
WBPaper00034843 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00065158 | |||||||
Remark | ski-1 became an other-name of dac-1 as this locus encodes the C. elegans ortholog of Dachshund, rather than of the related protein SKI | Person_evidence | WBPerson473 | ||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |