WormBase Tree Display for Gene: WBGene00000962
expand all nodes | collapse all nodes | view schema
| WBGene00000962 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T21E12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | dhc-1 | Person_evidence | WBPerson1562 | |||||
| Sequence_name | T21E12.4 | ||||||||
| Molecular_name | T21E12.4a | ||||||||
| T21E12.4a.1 | |||||||||
| CE23997 | |||||||||
| T21E12.4b | |||||||||
| CE51690 | |||||||||
| T21E12.4b.1 | |||||||||
| Other_name | let-354 | ||||||||
| spd-4 | |||||||||
| CELE_T21E12.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | dhc-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info (13) | |||||||||
| Disease_info | Experimental_model | DOID:1826 | Homo sapiens | Paper_evidence | WBPaper00028525 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 24 Aug 2021 00:00:00 | ||||||||
| DOID:0050453 | Homo sapiens | Paper_evidence | WBPaper00028525 | ||||||
| Accession_evidence | OMIM | 607432 | |||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Apr 2013 00:00:00 | ||||||||
| Potential_model | DOID:0070043 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2961) | |||||
| DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2961) | ||||||
| DOID:0070351 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2961) | ||||||
| DOID:0110175 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2961) | ||||||
| Disease_relevance | In humans, mutations in the LIS1 gene (Platelet activating factor acetylhydrolase, isoform 1B, alpha subunit; PAFAH1B1) and the LIS1 pathway, are implicated in Lissencephaly, a developmental abnormality associated with a failure of neuronal migration in the cerebral cortex, leading to mental retardation and epilepsy; human NDE1 and NDEL1, are effectors of LIS1; the elegans genetic model for epileptic siezures consists of lis-1 mutants that are responsive to the common seizure inducer pentylenetetrazole (PTZ) and diplay a distinct convulsive phenotype; studies in the worm show that dhc-1/dynein heavy chain (orthologous to human DYNC1H1), is a LIS1 pathway component and worms depleted for LIS1 pathway components via RNA interference, NUD-1, NUD-2, DHC-1, CDK-5, and CDKA-1, also exhibited significant convulsions following PTZ treatment; further nud-1 (orthologous to human NUDC), nud-2/NDE1 and cdk-5 show significant enhancement in convulsions in a lis-1 heterozygous background when compared with the wild-type background; these animals are also less likely to recover when PTZ treatment is removed, when compared to wild-type; these studies show that while knocking down target genes (lis-1, cdk-5, and cdka-1 that function in neuronal migration), and their interacting proteins like nud-1, nud-2 and dhc-1, does not yield spontaneous convulsions in C. elegans, further alterations in the neural environment through the application of PTZ serve to pass a critical threshold within these animals. | Homo sapiens | Curator_confirmed | WBPerson324 | |||||
| Models_disease_in_annotation | WBDOannot00000150 | ||||||||
| WBDOannot00001012 | |||||||||
| Molecular_info | Corresponding_CDS | T21E12.4a | |||||||
| T21E12.4b | |||||||||
| Corresponding_transcript | T21E12.4a.1 | ||||||||
| T21E12.4b.1 | |||||||||
| Other_sequence | MI05328 | ||||||||
| HG09483 | |||||||||
| CR06938 | |||||||||
| SR04717 | |||||||||
| EY473357.1 | |||||||||
| HGC05288_1 | |||||||||
| HG04602 | |||||||||
| Tcol_isotig01501 | |||||||||
| ACC31961_1 | |||||||||
| FC541563.1 | |||||||||
| FC547166.1 | |||||||||
| HGC11537_1 | |||||||||
| CR04675 | |||||||||
| CR03857 | |||||||||
| FD514573.1 | |||||||||
| Acan_isotig01643 | |||||||||
| Dviv_isotig23127 | |||||||||
| HG04398 | |||||||||
| EX554095.1 | |||||||||
| CBC10492_1 | |||||||||
| EY460757.1 | |||||||||
| ACC29450_1 | |||||||||
| AF345794.1 | |||||||||
| HGC12145_1 | |||||||||
| HS01156 | |||||||||
| EY465485.1 | |||||||||
| ASC04257_1 | |||||||||
| FC542230.1 | |||||||||
| JI462358.1 | |||||||||
| HGC11240_1 | |||||||||
| CRC10764_1 | |||||||||
| CRC00967_1 | |||||||||
| EX549147.1 | |||||||||
| EX552788.1 | |||||||||
| Tcol_isotig01499 | |||||||||
| CBC07849_1 | |||||||||
| JI466643.1 | |||||||||
| MA02017 | |||||||||
| JI469556.1 | |||||||||
| RSC00485_1 | |||||||||
| HSC01511_1 | |||||||||
| JI466703.1 | |||||||||
| Tcol_isotig18307 | |||||||||
| Name_isotig05541 | |||||||||
| Tcir_isotig15105 | |||||||||
| ACC09510_1 | |||||||||
| EX545222.1 | |||||||||
| JI473892.1 | |||||||||
| CSC01077_1 | |||||||||
| Acan_isotig23031 | |||||||||
| BUC01617_1 | |||||||||
| Oden_isotig13546 | |||||||||
| Hbac_isotig04221 | |||||||||
| FC819864.1 | |||||||||
| FC546244.1 | |||||||||
| CRC03983_1 | |||||||||
| HG04631 | |||||||||
| CBC01865_1 | |||||||||
| EX552977.1 | |||||||||
| Acan_isotig01642 | |||||||||
| BXC07207_1 | |||||||||
| EX559338.1 | |||||||||
| CK854663.1 | |||||||||
| EY462170.1 | |||||||||
| Tcol_isotig01500 | |||||||||
| EX557334.1 | |||||||||
| CRC12256_1 | |||||||||
| FC810952.1 | |||||||||
| EY470294.1 | |||||||||
| EX548381.1 | |||||||||
| HC03110 | |||||||||
| CJC09629_1 | |||||||||
| JI459625.1 | |||||||||
| JI163783.1 | |||||||||
| FM207803.1 | |||||||||
| FC545746.1 | |||||||||
| FC544967.1 | |||||||||
| FC817987.1 | |||||||||
| CR07864 | |||||||||
| Dviv_isotig25064 | |||||||||
| EX548746.1 | |||||||||
| TDC01437_1 | |||||||||
| SRC03452_1 | |||||||||
| HC04485 | |||||||||
| BXC05721_1 | |||||||||
| MJ04647 | |||||||||
| MJC03793_1 | |||||||||
| MAC01346_1 | |||||||||
| Tcir_isotig05652 | |||||||||
| FC546814.1 | |||||||||
| JI459579.1 | |||||||||
| Acan_isotig01644 | |||||||||
| EX538063.1 | |||||||||
| Oden_isotig13545 | |||||||||
| HS00094 | |||||||||
| HCC01244_1 | |||||||||
| HG05231 | |||||||||
| Tcol_isotig01502 | |||||||||
| EY473347.1 | |||||||||
| EX550223.1 | |||||||||
| EY465318.1 | |||||||||
| CRC03947_1 | |||||||||
| EX547627.1 | |||||||||
| MIC04661_1 | |||||||||
| EY462088.1 | |||||||||
| WBC02134_1 | |||||||||
| HSC00228_1 | |||||||||
| CR04119 | |||||||||
| BXC07559_1 | |||||||||
| FC816412.1 | |||||||||
| Name_isotig05777 | |||||||||
| EX555097.1 | |||||||||
| AS10298 | |||||||||
| EX559803.1 | |||||||||
| SRC00785_1 | |||||||||
| GT737140.1 | |||||||||
| CB037474.1 | |||||||||
| HCC09529_1 | |||||||||
| Hbac_isotig06346 | |||||||||
| FC547729.1 | |||||||||
| SR00190 | |||||||||
| JI473733.1 | |||||||||
| Associated_feature | WBsf643215 | ||||||||
| WBsf656205 | |||||||||
| WBsf656206 | |||||||||
| WBsf656207 | |||||||||
| WBsf656208 | |||||||||
| WBsf983394 | |||||||||
| WBsf217528 | |||||||||
| WBsf217529 | |||||||||
| Experimental_info | RNAi_result (43) | ||||||||
| Expr_pattern (19) | |||||||||
| Drives_construct | WBCnstr00003093 | ||||||||
| WBCnstr00007434 | |||||||||
| WBCnstr00008880 | |||||||||
| WBCnstr00013402 | |||||||||
| WBCnstr00037176 | |||||||||
| WBCnstr00042469 | |||||||||
| Construct_product | WBCnstr00007434 | ||||||||
| WBCnstr00008880 | |||||||||
| WBCnstr00013402 | |||||||||
| WBCnstr00037176 | |||||||||
| WBCnstr00039347 | |||||||||
| WBCnstr00042469 | |||||||||
| Antibody | WBAntibody00000242 | ||||||||
| WBAntibody00000917 | |||||||||
| WBAntibody00002792 | |||||||||
| WBAntibody00002860 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (292) | |||||||||
| WBProcess | WBbiopr:00000017 | ||||||||
| Map_info | Map | I | Position | -1.31043 | Error | 0.007943 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | T21E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 2523 | |||||||
| Multi_point | 1007 | ||||||||
| 1758 | |||||||||
| 1759 | |||||||||
| 1760 | |||||||||
| 1761 | |||||||||
| 1762 | |||||||||
| 1763 | |||||||||
| 3862 | |||||||||
| Pos_neg_data (15) | |||||||||
| Reference (130) | |||||||||
| Remark | Sequence connection from [Schmidt D, Strome S] | ||||||||
| Previous connection of genomic_sequence to dhc-14 was a typo [030225 ck1] | |||||||||
| Method | Gene |
