WormBase Tree Display for Gene: WBGene00001066
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| WBGene00001066 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | Y41E3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-4 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y41E3.2 | ||||||||
| Molecular_name | Y41E3.2 | ||||||||
| Y41E3.2.1 | |||||||||
| CE18370 | |||||||||
| Other_name | col-134 | ||||||||
| CELE_Y41E3.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | dpy-4 | ||||||||
| DB_info | Database | AceView | gene | 4P750 | |||||
| WormQTL | gene | WBGene00001066 | |||||||
| WormFlux | gene | WBGene00001066 | |||||||
| NDB | locus_tag | CELE_Y41E3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001066|UniProtKB=O62432 | |||||||
| family | PTHR24023 | ||||||||
| NCBI | gene | 178414 | |||||||
| RefSeq | protein | NM_070407.4 | |||||||
| TrEMBL | UniProtAcc | O62432 | |||||||
| UniProt_GCRP | UniProtAcc | O62432 | |||||||
| OMIM | gene | 120090 | |||||||
| 120210 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00143792 | ||||||||
| Allele (33) | |||||||||
| Legacy_information | e11661sd icr : large dumpy e1166/+ is slightly dumpy. ES3 (adult) ES1 (larva). ME3. NA2 (e1158sd icr). | ||||||||
| [C.elegansII] e1166sd,icr : large dumpy, e1166/+ is slightly dumpy. ES3 (adult) ES1 (larva). ME3. OA1: e1158sd, icr. [Cox et al. 1980; DR] | |||||||||
| Strain (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037899 | ||||||||
| 00037900 | |||||||||
| 00037901 | |||||||||
| 00037902 | |||||||||
| 00108190 | |||||||||
| Ortholog (33) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | dpy-4 encodes a cuticle collagen; dpy-4 activity is required for normal body morphology, locomotion, and larval development. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 08 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); brain small vessel disease 2; and multiple epiphyseal dysplasia 6. Is an ortholog of human COL27A1 (collagen type XXVII alpha 1 chain); COL4A2 (collagen type IV alpha 2 chain); and COL9A1 (collagen type IX alpha 1 chain). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070301 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||
| DOID:0112314 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
| DOID:0060263 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
| DOID:13223 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
| DOID:13129 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
| DOID:0080046 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| DOID:2256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| DOID:1936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
| Molecular_info | Corresponding_CDS | Y41E3.2 | |||||||
| Corresponding_transcript | Y41E3.2.1 | ||||||||
| Other_sequence (85) | |||||||||
| Associated_feature | WBsf231232 | ||||||||
| WBsf231233 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1028206 | ||||||||
| Expr1030675 | |||||||||
| Expr1159893 | |||||||||
| Expr2011074 | |||||||||
| Expr2029311 | |||||||||
| Drives_construct | WBCnstr00021830 | ||||||||
| WBCnstr00037105 | |||||||||
| Construct_product | WBCnstr00037105 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (305) | |||||||||
| Interaction (239) | |||||||||
| Map_info | Map | IV | Position | 12.7616 | Error | 0.004148 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDp3 | |||||||
| sDf23 | |||||||||
| yDp1 | |||||||||
| rT1 | |||||||||
| Positive_clone | Y41E3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| From CDS info | |||||||||
| Negative | Outside_rearr | nDp5 | |||||||
| Mapping_data | 2_point (26) | ||||||||
| Multi_point (86) | |||||||||
| Pos_neg_data | 835 | ||||||||
| 974 | |||||||||
| 978 | |||||||||
| 980 | |||||||||
| 985 | |||||||||
| 2730 | |||||||||
| 3256 | |||||||||
| 4681 | |||||||||
| 4684 | |||||||||
| Reference (59) | |||||||||
| Method | Gene |
