| WBGene00001079 | SMap | S_parent | Sequence | T22B3 |
|---|
| Identity | Version | 1 |
| | Name | CGC_name | dpy-20 | Person_evidence | WBPerson261 |
| | | Sequence_name | T22B3.1 |
| | | Molecular_name | T22B3.1 |
| | | | T22B3.1.1 |
| | | | CE40520 |
| | | Other_name | CELE_T22B3.1 | Accession_evidence | NDB | BX284604 |
| | | Public_name | dpy-20 |
| | DB_info | Database | AceView | gene | 4M462 |
| | | | WormQTL | gene | WBGene00001079 |
| | | | WormFlux | gene | WBGene00001079 |
| | | | NDB | locus_tag | CELE_T22B3.1 |
| | | | NCBI | gene | 178105 |
| | | | RefSeq | protein | NM_069814.6 |
| | | | SwissProt | UniProtAcc | P34807 |
| | | | TREEFAM | TREEFAM_ID | TF320341 |
| | | | UniProt_GCRP | UniProtAcc | P34807 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | dpy |
| | Reference_allele | WBVar00143888 |
| | Allele (68) |
| | Legacy_information | e1282ts : medium dumpy (20x) weak dumpy (15x) strong dumpy round- nosed (25x). ES3 (25x all stages). ME2 (20x). NA4 (other alleles all strong dumpy (20x) almost inviable (15x) : e1362 e1415 e2017amber). |
| | | See also e1362, e1415, e1422, e2017, e2480, s1711, s1774, s1776, s2033 |
| | | [C.elegansII] e1282ts : medium dumpy (20C), weak dumpy (15C), strong dumpy, round-nosed (25C). TSPduring L1 and L2 stages. ES3 (25C all stages). ME2 (20C). OA>10: other alleles mostly severe round-headed dumpy (20C), inviable or almost inviable (15C), e1362,e1415, cn142 (strongest allele), e2017amb (slightly weaker), cn322, etc. m474::Tc1 : strong dumpy, reverts to Dpy (m474s2033)or wild type (m474m495). Cloned: rare 1.9 kb RNA, most abundant in L2; encodes predicted 359aa novel protein. [Hosono et al. 1982; Clark et al. 1995; BC] |
| | Strain (177) |
| | RNASeq_FPKM (74) |
| | GO_annotation | 00044559 |
| | | 00044560 |
| | | 00044561 |
| | | 00044562 |
| | | 00108206 |
| | Ortholog (27) |
| | Structured_description | Concise_description | dpy-20 encodes a BED zinc finger protein, with no known homologs outside of nematodes, that is required for normal body morphology. | Paper_evidence | WBPaper00000609 |
| | | | | | WBPaper00002182 |
| | | | | Curator_confirmed | WBPerson567 |
| | | | | Date_last_updated | 17 Jun 2004 00:00:00 |
| | | Automated_description | Enables sequence-specific double-stranded DNA binding activity. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | T22B3.1 |
| | Corresponding_CDS_history | T22B3.1:wp166 |
| | Corresponding_transcript | T22B3.1.1 |
| | Other_sequence | EY467652.1 |
| | | ACC10421_1 |
| | | Dviv_isotig16525 |
| | | Dviv_isotig16524 |
| | | Acan_isotig18415 |
| | Associated_feature | WBsf668360 |
| | | WBsf997910 |
| | | WBsf997911 |
| | | WBsf997912 |
| | | WBsf1018244 |
| | | WBsf1018245 |
| | | WBsf1018246 |
| | Transcription_factor | WBTranscriptionFactor000478 |
| Experimental_info | RNAi_result (17) |
| | Expr_pattern | Expr1012656 |
| | | Expr1157340 |
| | | Expr2011063 |
| | | Expr2029300 |
| | Drives_construct | WBCnstr00006715 |
| | | WBCnstr00006803 |
| | | WBCnstr00019441 |
| | | WBCnstr00037093 |
| | Construct_product | WBCnstr00006715 |
| | | WBCnstr00006803 |
| | | WBCnstr00007882 |
| | | WBCnstr00019441 |
| | | WBCnstr00037093 |
| | Microarray_results (21) |
| | Expression_cluster | WBPaper00036375:enriched_in_PVD_OLL |
| | | WBPaper00037682:sma-2_sma-4_upregulated |
| | | WBPaper00037950:A-class-motor-neurons_embryo_enriched |
| | | WBPaper00037950:A-class-motor-neurons_embryo_SelectivelyEnriched |
| | | WBPaper00037950:A-class-motor-neurons_L1-larva_expressed |
| | | WBPaper00037950:all-neurons_embryo_enriched |
| | | WBPaper00037950:all-neurons_embryo_SelectivelyEnriched |
| | | WBPaper00037950:all-neurons_L1-larva_expressed |
| | | WBPaper00037950:AVE-neuron_L1-larva_expressed |
| | | WBPaper00037950:bodywall-muscle_embryo_enriched |
| | | WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched |
| | | WBPaper00037950:bodywall-muscle_L1-larva_expressed |
| | | WBPaper00037950:coelomocytes_L1-larva_expressed |
| | | WBPaper00037950:dopaminergic-neurons_L1-larva_expressed |
| | | WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed |
| | | WBPaper00037950:germline-precursors_blastula-embryo_expressed |
| | | WBPaper00037950:hypodermis_L1-larva_expressed |
| | | WBPaper00037950:hypodermis_L3-L4-larva_expressed |
| | | WBPaper00037950:hypodermis_larva_enriched |
| | | WBPaper00037950:intestine_L1-larva_expressed |
| | | WBPaper00037950:pharyngeal-muscle_L1-larva_expressed |
| | | WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed |
| | | WBPaper00038061:aldicarb_upregulated |
| | | WBPaper00038168:lin-15B(n744)_downregulated |
| | | WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray |
| | | WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq |
| | | WBPaper00040221:DAF-12_target_ALF4 |
| | | WBPaper00042215:wdr-23(tm1817)_upregulated |
| | | WBPaper00042477:prp-8(RNAi)_downregulated_RNAseq |
| | | WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq |
| | | WBPaper00043945:MeHg_upregulated |
| | | WBPaper00044260:1-methylnicotinamide_upregulated |
| | | WBPaper00044260:nicotinc-acid_upregulated |
| | | WBPaper00044736:oscillating_dev_expression |
| | | WBPaper00045390:tunicamycin_upregulated |
| | | WBPaper00045390:ubc-9(RNAi)_upregulated |
| | | WBPaper00045417:19Q-huntingtin_upreglated |
| | | WBPaper00045420:fertilization_downregulated_transcript |
| | | WBPaper00045774:clk-1_downregulated |
| | | WBPaper00045934:wrn-1(gk99)_upregulated |
| | | WBPaper00045974:NSM_enriched_totalRNA_tiling |
| | | WBPaper00046012:tdp-1(ok803)_upregulated |
| | | WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h |
| | | WBPaper00046887:WNT-target |
| | | WBPaper00048611:MnCl2_upregulated |
| | | WBPaper00049498:npr-1(ur89)_regulated_2 |
| | | WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031) |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C |
| | | WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C |
| | | WBPaper00050726:OsmoticStress_regulated_Food |
| | | WBPaper00050726:OsmoticStress_regulated_NoFood |
| | | WBPaper00050801:DAF-12_dauer_regulome |
| | | WBPaper00050801:DAF-16_dauer_regulome |
| | | WBPaper00050801:DPY-21_dauer_regulome |
| | | WBPaper00050801:SET-4_dauer_regulome |
| | | WBPaper00050990:hypodermis_enriched |
| | | WBPaper00050990:hypodermis_expressed |
| | | WBPaper00051404:alg-1(gk214)_downregulated |
| | | WBPaper00051404:alg-2(ok304)_downregulated |
| | | WBPaper00053020:sid-3(ok973)_upregulated |
| | | WBPaper00053184:sma-2(rax5)_upregulated |
| | | WBPaper00053184:sma-4(rax3)_upregulated |
| | | WBPaper00053295:lin-22(ot269)_upregulated |
| | | WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII |
| | | WBPaper00053388:dauer_regulated_Cluster5 |
| | | WBPaper00054493:hpl-2(tm1489)_upregulated |
| | | WBPaper00055013:hmg-3(bar24)_downregulated |
| | | WBPaper00055013:spt-16(RNAi)_downregulated |
| | | WBPaper00055386:daf-2(e1370)_upregulated |
| | | WBPaper00055862:antimycin_damt-1(gk961032)_regulated |
| | | WBPaper00055941:atfs-1(et15)_upregulated |
| | | WBPaper00055971:nhl-2(ok818)_25C_downregulated |
| | | WBPaper00056169:rrf-3(pk1426)_downregulated_L4 |
| | | WBPaper00056169:rrf-3(pk1426)_upregulated_L1 |
| | | WBPaper00056284:ints-5(RNAi)_downregulated |
| | | WBPaper00056284:ints-6(t1903)_downregulated |
| | | WBPaper00056290:hsp-6(mg585)_upregulated |
| | | WBPaper00056290:mdt-15(mg584)_upregulated |
| | | WBPaper00056330:glycine_downregulated |
| | | WBPaper00056443:sek-1(km4)_upregulated |
| | | WBPaper00057041:spc-1(cas971)_upregulated |
| | | WBPaper00057041:unc-70(cas983)_upregulated |
| | | WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium |
| | | WBPaper00057068:numr-1(RNAi)_downregulated |
| | | WBPaper00057154:HeatShock_downregulated_miRNA-target |
| | | WBPaper00057154:HeatShock_upregulated_mRNA |
| | | WBPaper00057347:nhr-14(tm1473)_downreglated |
| | | WBPaper00058948:npr-8(ok1439)_downregulated_PA14 |
| | | WBPaper00058969:RIS_depleted |
| | | WBPaper00059117:B.subtilis_upregulated |
| | | WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA |
| | | WBPaper00059334:sacy-1(depletion)_regulated |
| | | WBPaper00059426:SiO2-nanoparticles_upregulated |
| | | WBPaper00059664:srbc-48(ac23)_upregulated |
| | | WBPaper00059754:E.faecalis_OG1RF_upregulated |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060445:ikb-1(nr2027)_downregulated_L4 |
| | | WBPaper00060445:nfki-1(cer1)_downregulated_L4 |
| | | WBPaper00060683:hlh-11(ko1)_upregulated |
| | | WBPaper00060764:swsn-1(os22ts)_upregulated |
| | | WBPaper00060811:L1_vs_adult_downregulated_neural |
| | | WBPaper00060871:M.humicola-extract_1h_regulated |
| | | WBPaper00060909:atfs-1(cmh15)_downregulated |
| | | WBPaper00061007:HB101_upregulated |
| | | WBPaper00061007:S.aquatilis_upregulated |
| | | WBPaper00061341:28C_48h_upregulated |
| | | WBPaper00061424:Diet_MYb120_upregulated |
| | | WBPaper00061424:Diet_MYb131_upregulated |
| | | WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection |
| | | WBPaper00061527:col-128-cdh-10_9234 |
| | | WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated |
| | | WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated |
| | | WBPaper00061651:DB01_enriched |
| | | WBPaper00061651:I2_enriched |
| | | WBPaper00061651:I5_enriched |
| | | WBPaper00061651:M1_enriched |
| | | WBPaper00061651:M2_enriched |
| | | WBPaper00061651:M5_enriched |
| | | WBPaper00061753:csr-1(tor159)_upregulated_25C |
| | | WBPaper00062156:jmjd-1.2(zr1010)_upregulated |
| | | WBPaper00062156:jmjd-5(zr1234)_upregulated |
| | | WBPaper00062325:muscle_enriched_coding-RNA |
| | | WBPaper00062446:nhr-8(hd117)_upregulated |
| | | WBPaper00062456:doxycycline_upregulated_N2_transcript |
| | | WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium |
| | | WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated |
| | | WBPaper00062672:let-418(n3536)_upregulated |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064107:lin-35(n745)_upregulated |
| | | WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated |
| | | WBPaper00064505:tamoxifen_downregulated |
| | | WBPaper00064532:pals-25(icb98)_downregulated |
| | | WBPaper00064637:cox-5B(RNAi)_upregulated |
| | | WBPaper00064661:lpd-3(ok2138)_upregulated |
| | | WBPaper00064788:ketamine_upregulated |
| | | WBPaper00064933:bcf-1(ylf1)_upregulated_transcript |
| | | WBPaper00065029:cadmium_downregulated |
| | | WBPaper00065096:25C_vs_20C_downregulated |
| | | WBPaper00065096:Day10_vs_Day1_downregulated |
| | | WBPaper00065581:hpk-1(pk1393)_upregulated |
| | | WBPaper00065746:eat-2(ad1113)_downregulated |
| | | WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977) |
| | | WBPaper00065749:Heat-Shock_downregulated_N2 |
| | | WBPaper00066004:tdp-1(csb38)_upregulated |
| | | WBPaper00066110:tetraploid_vs_diploid_upregulated |
| | | WBPaper00066204:CdCl2_upregulated_mRNA |
| | | cgc4489_group_7 |
| | | cgc4489_group_22 |
| | | WBPaper00024393:strongly_regulated_dauer_genes |
| | | WBPaper00025141:N2_Expressed_Genes |
| | | WBPaper00025141:unc-4::GFP_Enriched_Genes |
| | | WBPaper00025141:unc-4::GFP_Expressed_Genes |
| | | WBPaper00026929:sir-2.1_overexpression_regulated |
| | | WBPaper00026952:class_E |
| | | WBPaper00027111:eri-1(mg366)_downregulated |
| | | WBPaper00030839:Embryo_A_Class |
| | | WBPaper00030839:Embryo_Pan_Neuronal |
| | | WBPaper00030985:Serratia_marcesens_downregulated |
| | | WBPaper00031003:0hr_muscle_enriched |
| | | WBPaper00031003:24hr_muscle_enriched |
| | | WBPaper00031003:total_muscle_enriched |
| | | WBPaper00035588:alg-1(-)_upregulated |
| | | WBPaper00036123:Cadmium_regulated |
| | | WBPaper00036130:mir-243_up_regulated |
| | | WBPaper00036286:Pattern_G |
| | | WBPaper00040116:pRJ-FR.5_down_regulated |
| | | WBPaper00040185:nhr-23(RNAi)_downregulated |
| | | WBPaper00041939:control_vs_EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_48h |
| | | WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00046548:dafachronic-acid_upregulated |
| | | WBPaper00047070:N2_starvation_downregulated |
| | | WBPaper00048989:N2_rapamycin_upregulated |
| | | WBPaper00056330:mrps-5(RNAi)_upregulated |
| | | [cgc6390]:Cluster_B |
| | Interaction (39) |
| Map_info | Map | IV | Position | 5.21542 | Error | 0.003855 |
| | Well_ordered |
| | Positive | Inside_rearr | nDf27 |
| | | | sDf8 |
| | | Positive_clone | BC#L302 |
| | | | T22B3 | Inferred_automatically | From sequence, transcript, pseudogene data |
| | Negative | Outside_rearr | nDf28 |
| | | | mDp4 |
| | Mapping_data | 2_point (21) |
| | | Multi_point (169) |
| | | Pos_neg_data (28) |
| | Landmark_gene |
| Reference (108) |
| Method | Gene |
