WormBase Tree Display for Gene: WBGene00001079
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| WBGene00001079 | SMap | S_parent | Sequence | T22B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-20 | Person_evidence | WBPerson261 | |||||
| Sequence_name | T22B3.1 | ||||||||
| Molecular_name | T22B3.1 | ||||||||
| T22B3.1.1 | |||||||||
| CE40520 | |||||||||
| Other_name | CELE_T22B3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dpy-20 | ||||||||
| DB_info | Database | AceView | gene | 4M462 | |||||
| WormQTL | gene | WBGene00001079 | |||||||
| WormFlux | gene | WBGene00001079 | |||||||
| NDB | locus_tag | CELE_T22B3.1 | |||||||
| NCBI | gene | 178105 | |||||||
| RefSeq | protein | NM_069814.6 | |||||||
| SwissProt | UniProtAcc | P34807 | |||||||
| TREEFAM | TREEFAM_ID | TF320341 | |||||||
| UniProt_GCRP | UniProtAcc | P34807 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00143888 | ||||||||
| Allele (68) | |||||||||
| Legacy_information | e1282ts : medium dumpy (20x) weak dumpy (15x) strong dumpy round- nosed (25x). ES3 (25x all stages). ME2 (20x). NA4 (other alleles all strong dumpy (20x) almost inviable (15x) : e1362 e1415 e2017amber). | ||||||||
| See also e1362, e1415, e1422, e2017, e2480, s1711, s1774, s1776, s2033 | |||||||||
| [C.elegansII] e1282ts : medium dumpy (20C), weak dumpy (15C), strong dumpy, round-nosed (25C). TSPduring L1 and L2 stages. ES3 (25C all stages). ME2 (20C). OA>10: other alleles mostly severe round-headed dumpy (20C), inviable or almost inviable (15C), e1362,e1415, cn142 (strongest allele), e2017amb (slightly weaker), cn322, etc. m474::Tc1 : strong dumpy, reverts to Dpy (m474s2033)or wild type (m474m495). Cloned: rare 1.9 kb RNA, most abundant in L2; encodes predicted 359aa novel protein. [Hosono et al. 1982; Clark et al. 1995; BC] | |||||||||
| Strain (177) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00044559 | ||||||||
| 00044560 | |||||||||
| 00044561 | |||||||||
| 00044562 | |||||||||
| 00108206 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | dpy-20 encodes a BED zinc finger protein, with no known homologs outside of nematodes, that is required for normal body morphology. | Paper_evidence | WBPaper00000609 | |||||
| WBPaper00002182 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables sequence-specific double-stranded DNA binding activity. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22B3.1 | |||||||
| Corresponding_CDS_history | T22B3.1:wp166 | ||||||||
| Corresponding_transcript | T22B3.1.1 | ||||||||
| Other_sequence | EY467652.1 | ||||||||
| ACC10421_1 | |||||||||
| Dviv_isotig16525 | |||||||||
| Dviv_isotig16524 | |||||||||
| Acan_isotig18415 | |||||||||
| Associated_feature | WBsf668360 | ||||||||
| WBsf997910 | |||||||||
| WBsf997911 | |||||||||
| WBsf997912 | |||||||||
| WBsf1018244 | |||||||||
| WBsf1018245 | |||||||||
| WBsf1018246 | |||||||||
| Transcription_factor | WBTranscriptionFactor000478 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1012656 | ||||||||
| Expr1157340 | |||||||||
| Expr2011063 | |||||||||
| Expr2029300 | |||||||||
| Drives_construct | WBCnstr00006715 | ||||||||
| WBCnstr00006803 | |||||||||
| WBCnstr00019441 | |||||||||
| WBCnstr00037093 | |||||||||
| Construct_product | WBCnstr00006715 | ||||||||
| WBCnstr00006803 | |||||||||
| WBCnstr00007882 | |||||||||
| WBCnstr00019441 | |||||||||
| WBCnstr00037093 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction | WBInteraction000000018 | ||||||||
| WBInteraction000000021 | |||||||||
| WBInteraction000000023 | |||||||||
| WBInteraction000000026 | |||||||||
| WBInteraction000000339 | |||||||||
| WBInteraction000002488 | |||||||||
| WBInteraction000002494 | |||||||||
| WBInteraction000030349 | |||||||||
| WBInteraction000030350 | |||||||||
| WBInteraction000030351 | |||||||||
| WBInteraction000030352 | |||||||||
| WBInteraction000030353 | |||||||||
| WBInteraction000030354 | |||||||||
| WBInteraction000124820 | |||||||||
| WBInteraction000126477 | |||||||||
| WBInteraction000133216 | |||||||||
| WBInteraction000134944 | |||||||||
| WBInteraction000165684 | |||||||||
| WBInteraction000165685 | |||||||||
| WBInteraction000165910 | |||||||||
| WBInteraction000166490 | |||||||||
| WBInteraction000166509 | |||||||||
| WBInteraction000175500 | |||||||||
| WBInteraction000177999 | |||||||||
| WBInteraction000314745 | |||||||||
| WBInteraction000317684 | |||||||||
| WBInteraction000368192 | |||||||||
| WBInteraction000450651 | |||||||||
| WBInteraction000457020 | |||||||||
| WBInteraction000457069 | |||||||||
| WBInteraction000519041 | |||||||||
| WBInteraction000519994 | |||||||||
| WBInteraction000519995 | |||||||||
| WBInteraction000519996 | |||||||||
| WBInteraction000519997 | |||||||||
| WBInteraction000530205 | |||||||||
| WBInteraction000532344 | |||||||||
| WBInteraction000532520 | |||||||||
| WBInteraction000535168 | |||||||||
| Map_info | Map | IV | Position | 5.21542 | Error | 0.003855 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDf27 | |||||||
| sDf8 | |||||||||
| Positive_clone | BC#L302 | ||||||||
| T22B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Outside_rearr | nDf28 | |||||||
| mDp4 | |||||||||
| Mapping_data | 2_point (21) | ||||||||
| Multi_point (169) | |||||||||
| Pos_neg_data (28) | |||||||||
| Landmark_gene | |||||||||
| Reference (108) | |||||||||
| Method | Gene |
