WormBase Tree Display for Gene: WBGene00001389
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| WBGene00001389 | Evidence | Paper_evidence | WBPaper00005754 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F15B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | far-5 | |||||||
| Sequence_name | F15B9.3 | ||||||||
| Molecular_name | F15B9.3a | ||||||||
| F15B9.3a.1 | |||||||||
| CE33997 | |||||||||
| F15B9.3b | |||||||||
| CE43005 | |||||||||
| F15B9.3b.1 | |||||||||
| Other_name | CELE_F15B9.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | far-5 | ||||||||
| DB_info | Database | AceView | gene | 5N475 | |||||
| WormQTL | gene | WBGene00001389 | |||||||
| WormFlux | gene | WBGene00001389 | |||||||
| NDB | locus_tag | CELE_F15B9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001389|UniProtKB=Q19480 | |||||||
| family | PTHR31418 | ||||||||
| NCBI | gene | 184522 | |||||||
| RefSeq | protein | NM_073849.6 | |||||||
| NM_001136419.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF316252 | |||||||
| TrEMBL | UniProtAcc | Q19480 | |||||||
| B5U8N0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q19480 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | far | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00108646 | ||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00001385 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001386 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001387 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001388 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001391 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001390 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015578 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001392 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | far-5 encodes a member of a class of fatty acid-and retinol-binding proteins that are known to be secreted by parasitic nematodes and plants; far-5 binds lipid in fluorescence-based assays, however, the precise function of far-5 is not known. | Paper_evidence | WBPaper00005754 | |||||
| WBPaper00006113 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15B9.3a | |||||||
| F15B9.3b | |||||||||
| Corresponding_CDS_history | F15B9.3:wp101 | ||||||||
| Corresponding_transcript | F15B9.3a.1 | ||||||||
| F15B9.3b.1 | |||||||||
| Other_sequence | CBC06556_1 | ||||||||
| Associated_feature | WBsf647431 | ||||||||
| WBsf232727 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044697 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013357 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2395 | ||||||||
| Expr1021479 | |||||||||
| Expr1148670 | |||||||||
| Expr2011424 | |||||||||
| Expr2029662 | |||||||||
| Drives_construct | WBCnstr00036979 | ||||||||
| Construct_product | WBCnstr00036979 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (139) | |||||||||
| Interaction | WBInteraction000126567 | ||||||||
| WBInteraction000135516 | |||||||||
| WBInteraction000135517 | |||||||||
| WBInteraction000135518 | |||||||||
| WBInteraction000135519 | |||||||||
| WBInteraction000322354 | |||||||||
| WBInteraction000326215 | |||||||||
| WBInteraction000370522 | |||||||||
| WBInteraction000432237 | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | V | Position | 4.78251 | Error | 0.002383 | |||
| Positive | Positive_clone | F15B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4294 | |||||||
| 4296 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005754 | ||||||||
| WBPaper00017594 | |||||||||
| Remark | [J.A.H : need correction of lag-2/far-5 predicted structure] | ||||||||
| [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal. | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
