WormBase Tree Display for Gene: WBGene00001436
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| WBGene00001436 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C29F7 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | fkh-4 | Person_evidence | WBPerson411 | |||||
| Sequence_name | C29F7.5 | ||||||||
| Molecular_name | C29F7.5 | ||||||||
| C29F7.5.1 | |||||||||
| CE45733 | |||||||||
| Other_name | tag-39 | CGC_data_submission | |||||||
| CELE_C29F7.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | fkh-4 | ||||||||
| DB_info | Database | AceView | gene | XO46 | |||||
| WormQTL | gene | WBGene00001436 | |||||||
| WormFlux | gene | WBGene00001436 | |||||||
| NDB | locus_tag | CELE_C29F7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001436|UniProtKB=O17617 | |||||||
| family | PTHR11829 | ||||||||
| NCBI | gene | 181466 | |||||||
| RefSeq | protein | NM_077837.6 | |||||||
| SwissProt | UniProtAcc | O17617 | |||||||
| TREEFAM | TREEFAM_ID | TF343804 | |||||||
| UniProt_GCRP | UniProtAcc | O17617 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 21 Jan 2011 10:38:55 | WBPerson1983 | Event | Split_into | WBGene00206389 | ||||
| Split_into | WBGene00206389 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fkh | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00030009 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00001435 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001437 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | fkh-4 encodes a member of the forkhead domain transcription factor family; triply mutant animals with reduced activity of fkh-3, fkh-4, and fkh-5 show reduced expression of 21U-RNA transcripts. | Paper_evidence | WBPaper00005730 | |||||
| WBPaper00041348 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 07 Oct 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29F7.5 | |||||||
| Corresponding_CDS_history | C29F7.5:wp223 | ||||||||
| Corresponding_transcript | C29F7.5.1 | ||||||||
| Associated_feature | WBsf654526 | ||||||||
| WBsf671193 | |||||||||
| WBsf671194 | |||||||||
| WBsf671195 | |||||||||
| WBsf978387 | |||||||||
| WBsf238135 | |||||||||
| WBsf238136 | |||||||||
| WBsf238137 | |||||||||
| Transcription_factor | WBTranscriptionFactor000167 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00113568 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041481 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011347 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022895 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2332 | ||||||||
| Expr10490 | |||||||||
| Expr10491 | |||||||||
| Expr10492 | |||||||||
| Expr1030861 | |||||||||
| Expr1145511 | |||||||||
| Expr1200007 | |||||||||
| Expr2011806 | |||||||||
| Expr2030044 | |||||||||
| Drives_construct | WBCnstr00010768 | ||||||||
| WBCnstr00036950 | |||||||||
| Construct_product | WBCnstr00015379 | ||||||||
| WBCnstr00017326 | |||||||||
| WBCnstr00036950 | |||||||||
| Microarray_results | 172877_x_at | ||||||||
| 190724_s_at | |||||||||
| A_12_P120057 | |||||||||
| Aff_C29F7.5 | |||||||||
| GPL19516_CGZ0006639 | |||||||||
| GPL21109_C29F7.5 | |||||||||
| GPL3518_CE08446 | |||||||||
| GPL8673_C29F7_5P01035 | |||||||||
| Expression_cluster (161) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | X | Position | 12.3319 | Error | 0.074008 | |||
| Positive | Positive_clone | C29F7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4311 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005730 | ||||||||
| WBPaper00011551 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029337 | |||||||||
| WBPaper00041419 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
