WormBase Tree Display for Gene: WBGene00001485
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| WBGene00001485 | Evidence | Person_evidence | WBPerson3175 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Author_evidence | Kwasnicka DA | ||||||||
| SMap | S_parent | Sequence | Y113G7A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | fre-1 | |||||||
| Sequence_name | Y113G7A.8 | ||||||||
| Molecular_name | Y113G7A.8a | ||||||||
| Y113G7A.8a.1 | |||||||||
| CE23279 | |||||||||
| Y113G7A.8b | |||||||||
| CE48258 | |||||||||
| Y113G7A.8b.1 | |||||||||
| Other_name | tag-62 | CGC_data_submission | |||||||
| CELE_Y113G7A.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fre-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fre | ||||||||
| Allele (418) | |||||||||
| Strain | WBStrain00035603 | ||||||||
| WBStrain00031609 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP5500 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00001262 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006510 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021314 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | fre-1 encodes an NADPH-dependent flavin reductase; fre-1 is the downstream gene in an operon with dcs-1, which encodes a scavenger mRNA decapping enzyme; reporter fusions using dcs-1 upstream sequence direct expression throughout the life cycle in neurons and pharyngeal muscle; expression is present in dauer larvae and enhanced by heat shock. | Paper_evidence | WBPaper00006128 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable FMN binding activity; flavin adenine dinucleotide binding activity; and oxidoreductase activity. Predicted to be involved in iron-sulfur cluster assembly. Located in nucleus. Expressed in neurons and pharyngeal muscle cell. Is an ortholog of human NDOR1 (NADPH dependent diflavin oxidoreductase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y113G7A.8a | |||||||
| Y113G7A.8b | |||||||||
| Corresponding_transcript | Y113G7A.8a.1 | ||||||||
| Y113G7A.8b.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055389 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036580 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2642 | ||||||||
| Expr2644 | |||||||||
| Expr1012671 | |||||||||
| Expr1158905 | |||||||||
| Expr2011877 | |||||||||
| Expr2030115 | |||||||||
| Drives_construct | WBCnstr00010884 | ||||||||
| Construct_product | WBCnstr00010884 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (78) | |||||||||
| Interaction (159) | |||||||||
| Map_info | Map | V | Position | 24.5786 | Error | 0.027082 | |||
| Positive | Positive_clone | Y113G7A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4325 | |||||||
| 4745 | |||||||||
| 5484 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006128 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
