WormBase Tree Display for Gene: WBGene00001490
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| WBGene00001490 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | frm-3 | Person_evidence | WBPerson204 | |||||
| Sequence_name | H05G16.1 | ||||||||
| Molecular_name | H05G16.1a | ||||||||
| H05G16.1a.1 | |||||||||
| CE43269 | |||||||||
| H05G16.1b | |||||||||
| CE52019 | |||||||||
| H05G16.1c | |||||||||
| CE40652 | |||||||||
| H05G16.1a.2 | |||||||||
| H05G16.1b.1 | |||||||||
| H05G16.1c.1 | |||||||||
| Other_name | CELE_H05G16.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | frm-3 | ||||||||
| DB_info | Database | AceView | gene | XM199 | |||||
| WormQTL | gene | WBGene00001490 | |||||||
| WormFlux | gene | WBGene00001490 | |||||||
| NDB | locus_tag | CELE_H05G16.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001490|UniProtKB=O17905 | |||||||
| family | PTHR45858 | ||||||||
| NCBI | gene | 186110 | |||||||
| RefSeq | protein | NM_077534.3 | |||||||
| NM_001375142.3 | |||||||||
| NM_001351892.5 | |||||||||
| TrEMBL | UniProtAcc | A0A1X7RBN3 | |||||||
| G5EDC0 | |||||||||
| O17905 | |||||||||
| UniProt_GCRP | UniProtAcc | O17905 | |||||||
| OMIM | gene | 300628 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 28 Apr 2017 01:35:57 | WBPerson1983 | Event | Acquires_merge | WBGene00009932 | ||||
| Acquires_merge | WBGene00009932 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | frm | ||||||||
| Allele (173) | |||||||||
| Strain | WBStrain00036481 | ||||||||
| WBStrain00023645 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002734 | ||||||||
| 00002735 | |||||||||
| 00002736 | |||||||||
| 00030973 | |||||||||
| 00030974 | |||||||||
| 00030975 | |||||||||
| 00030976 | |||||||||
| 00030977 | |||||||||
| 00108786 | |||||||||
| 00108787 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00001366 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00006431 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006450 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013682 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables GABA receptor binding activity. Involved in gamma-aminobutyric acid receptor clustering. Predicted to be located in adherens junction and plasma membrane. Expressed in dorsal nerve cord. Human ortholog(s) of this gene implicated in congenital nystagmus 1. Is an ortholog of human FARP2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111790 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8079) | ||||
| Molecular_info | Corresponding_CDS | H05G16.1a | |||||||
| H05G16.1b | |||||||||
| H05G16.1c | |||||||||
| Corresponding_CDS_history | H05G16.1:wp196 | ||||||||
| Corresponding_transcript | H05G16.1a.1 | ||||||||
| H05G16.1a.2 | |||||||||
| H05G16.1b.1 | |||||||||
| H05G16.1c.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf663372 | ||||||||
| WBsf663373 | |||||||||
| WBsf1007045 | |||||||||
| WBsf1007046 | |||||||||
| WBsf1007047 | |||||||||
| WBsf1007048 | |||||||||
| WBsf1023897 | |||||||||
| WBsf1023898 | |||||||||
| WBsf1023899 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016198 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047966 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077329 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015399 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049303 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032609 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033665 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00013168 | ||||||||
| WBCnstr00022289 | |||||||||
| WBCnstr00031805 | |||||||||
| WBCnstr00036913 | |||||||||
| Construct_product | WBCnstr00013168 | ||||||||
| WBCnstr00021429 | |||||||||
| WBCnstr00021430 | |||||||||
| WBCnstr00031805 | |||||||||
| WBCnstr00036913 | |||||||||
| WBCnstr00041671 | |||||||||
| Microarray_results (44) | |||||||||
| Expression_cluster (183) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | X | Position | 4.71117 | Error | 0.036864 | |||
| Positive | Positive_clone | H05G16 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5432 | |||||||
| 5040 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | data submitted by [Gobel V] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
