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WormBase Tree Display for Gene: WBGene00001518

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Name Class

WBGene00001518SMapS_parentSequenceF47D12
IdentityVersion2
NameCGC_namegar-2Person_evidenceWBPerson32
Sequence_nameF47D12.1
Molecular_name (15)
Other_nameacm-2Paper_evidenceWBPaper00027767
From_analysisWormAtlas
CELE_F47D12.1Accession_evidenceNDBBX284603
Public_namegar-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
210 Jun 2014 12:12:12WBPerson1983EventAcquires_mergeWBGene00043340
Acquires_mergeWBGene00043340
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgar
Allele (131)
StrainWBStrain00003713
WBStrain00031470
WBStrain00022222
RNASeq_FPKM (74)
GO_annotation (37)
OrthologWBGene00037064Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00055440Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154303Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134879Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00224440Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4086Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7146Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g7147Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18384Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g99Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g986Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22444Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10388Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g307Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13347Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3609Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00261.g8055Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-gar-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8169Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00816.g15737Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02710.g27638Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08889Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010752Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12964Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g24194Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30166700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7911Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00176865Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00246423Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00098038Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261937Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0037546Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
Paralog (20)
Structured_descriptionConcise_descriptiongar-2 encodes a novel, seven transmembrane-domain G protein-coupled acetylcholine receptor (AChR); when expressed in Xenopus oocytes treated with acetylcholine, GAR-2 is able to activate a mammalian G protein-activated inwardly rectifying K+ (GIRK1) channel, but not other channels, suggesting that GAR-2 couples to G proteins of the Gi family; pharmacological analyses indicate, however, that GAR-2 exhibits properties distinct from mammalian muscarinic AChRs; gar-2 is expressed from mid-embryogenesis through adulthood with expression seen in ciliated head neurons, ventral cord neurons, and the HSN (hermaphrodite-specific neuron).Paper_evidenceWBPaper00004388
Curator_confirmedWBPerson1843
Date_last_updated02 Nov 2006 00:00:00
Automated_descriptionEnables G protein-coupled acetylcholine receptor activity. Involved in G protein-coupled receptor signaling pathway; negative regulation of cholinergic synaptic transmission; and response to xenobiotic stimulus. Located in axon. Expressed in neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF47D12.1a
F47D12.1b
F47D12.1c
F47D12.1d
F47D12.1e
Corresponding_CDS_historyF47D12.1c:wp275
Corresponding_transcriptF47D12.1a.1
F47D12.1b.1
F47D12.1c.1
F47D12.1d.1
F47D12.1e.1
Other_sequenceJI221387.1
Dviv_isotig26799
GO251308.1
JI465005.1
CBC06005_1
FK808445.1
Associated_featureWBsf659047
WBsf717918
WBsf992708
WBsf992709
WBsf992710
WBsf992711
WBsf992712
WBsf992713
WBsf992714
WBsf1015067
WBsf1015068
WBsf1015069
WBsf1015070
WBsf225083
WBsf225084
Experimental_infoRNAi_result (11)
Expr_patternChronogram723
Expr1114
Expr8178
Expr8179
Expr10067
Expr1025714
Expr1030913
Expr1151485
Expr2011945
Expr2030182
Drives_constructWBCnstr00004148
WBCnstr00009595
WBCnstr00009870
WBCnstr00010085
WBCnstr00013162
WBCnstr00015039
WBCnstr00036893
Construct_productWBCnstr00001343
WBCnstr00036893
Microarray_results (49)
Expression_cluster (178)
InteractionWBInteraction000126687
WBInteraction000126688
WBInteraction000177996
WBInteraction000316805
WBInteraction000446248
Map_infoMapIIIPosition-1.39824Error0.002289
PositivePositive_cloneF47D12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4334
4407
Pseudo_map_position
Reference (31)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
MethodGene