WormBase Tree Display for Gene: WBGene00001586
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| WBGene00001586 | SMap | S_parent | Sequence | C09G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | lgc-57 | Person_evidence | WBPerson52943 | |||||
| WBPerson554 | |||||||||
| Sequence_name | C09G5.1 | ||||||||
| Molecular_name | C09G5.1 | ||||||||
| C09G5.1.1 | |||||||||
| CE36915 | |||||||||
| Other_name | gbr-4 | Person_evidence | WBPerson972 | ||||||
| WBPerson285 | |||||||||
| WBPerson309 | |||||||||
| ggr-1 | |||||||||
| CELE_C09G5.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | lgc-57 | ||||||||
| DB_info | Database | AceView | gene | 2K991 | |||||
| WormQTL | gene | WBGene00001586 | |||||||
| WormFlux | gene | WBGene00001586 | |||||||
| NDB | locus_tag | CELE_C09G5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001586|UniProtKB=Q09453 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 191636 | |||||||
| RefSeq | protein | NM_063905.4 | |||||||
| SwissProt | UniProtAcc | Q09453 | |||||||
| UniProt_GCRP | UniProtAcc | Q09453 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Jul 2004 11:24:48 | WBPerson1983 | Event | Acquires_merge | WBGene00007491 | ||||
| 3 | 09 Mar 2021 13:49:30 | WBPerson1983 | Name_change | CGC_name | lgc-57 | ||||
| Other_name | ggr-1 | ||||||||
| Acquires_merge | WBGene00007491 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgc | ||||||||
| Allele (122) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Concise_description | ggr-1 encodes a predicted member of the GABA/ glycine receptor family of ligand-gated chloride channels that affects thermotaxis; expressed in AIB, PVR, PVQ, AVH, and SMDV neurons and in some motor neurons in the ventral cord, and in the egg-laying muscles. | Paper_evidence | WBPaper00015370 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Predicted to be part of chloride channel complex. Expressed in AIB; nerve ring neurons; and ventral cord neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09G5.1 | |||||||
| Corresponding_CDS_history | C09G5.1:wp127 | ||||||||
| Corresponding_transcript | C09G5.1.1 | ||||||||
| Other_sequence | MJC03440_1 | ||||||||
| MJ04093 | |||||||||
| Associated_feature | WBsf989444 | ||||||||
| WBsf989445 | |||||||||
| WBsf989446 | |||||||||
| WBsf989447 | |||||||||
| WBsf1013072 | |||||||||
| WBsf1013073 | |||||||||
| WBsf222050 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010547 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040230 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr242 | ||||||||
| Expr15363 | |||||||||
| Expr1015753 | |||||||||
| Expr1144304 | |||||||||
| Drives_construct | WBCnstr00036843 | ||||||||
| Construct_product | WBCnstr00036843 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | II | Position | 3.12368 | Error | 6.6e-05 | |||
| Positive | Positive_clone | C09G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015370 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057957 | |||||||||
| WBPaper00064878 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
